Wall clock time and date at job start Sun Mar 29 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34747 * 126.44698 * 2 1 4 4 C 1.33967 * 107.76135 * 179.97438 * 3 2 1 5 5 N 1.30260 * 108.75886 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.44088 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.17007 * 0.02562 * 6 2 1 8 8 N 1.46905 * 109.46902 * 270.02725 * 7 6 2 9 9 C 1.46900 * 110.99933 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47036 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00032 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00178 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00359 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99828 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47034 * 90.00281 * 14 12 10 16 16 H 1.48499 * 109.47025 * 210.00266 * 14 12 10 17 17 H 1.48500 * 109.47336 * 330.00486 * 14 12 10 18 18 H 1.08999 * 109.46700 * 270.01320 * 1 2 3 19 19 H 1.08990 * 109.47109 * 30.01391 * 1 2 3 20 20 H 1.09001 * 109.47371 * 150.01905 * 1 2 3 21 21 H 1.07997 * 125.62305 * 180.02562 * 4 3 2 22 22 H 1.09001 * 109.47525 * 30.02021 * 7 6 2 23 23 H 1.08999 * 109.47609 * 150.02734 * 7 6 2 24 24 H 1.00900 * 111.00068 * 56.04403 * 8 7 6 25 25 H 1.09002 * 109.47288 * 299.99428 * 9 8 7 26 26 H 1.08997 * 109.47251 * 59.99885 * 9 8 7 27 27 H 0.96997 * 119.99989 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 0.0006 5 7 3.5783 -0.6479 0.0004 6 6 2.3050 -1.0806 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7071 -2.9855 1.3857 9 6 1.2676 -4.3867 1.4250 10 6 1.1272 -4.8290 2.8588 11 1 1.3432 -4.1385 3.6605 12 6 0.7239 -6.1156 3.1470 13 7 0.6017 -6.5018 4.3982 14 14 0.3509 -7.3102 1.7601 15 1 1.5881 -8.0454 1.3939 16 1 -0.6857 -8.2763 2.2044 17 1 -0.1461 -6.5588 0.5796 18 1 -0.3633 0.0002 1.0277 19 1 -0.3633 0.8898 -0.5140 20 1 -0.3634 -0.8901 -0.5135 21 1 4.4537 1.2848 0.0011 22 1 0.8970 -2.5997 -0.5139 23 1 2.5957 -3.1317 -0.5124 24 1 1.0733 -2.3935 1.9013 25 1 0.3059 -4.4802 0.9205 26 1 2.0043 -5.0128 0.9217 27 1 0.3177 -7.4068 4.6009 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397889490.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:43 Heat of formation + Delta-G solvation = 21.233794 kcal Electronic energy + Delta-G solvation = -11892.225134 eV Core-core repulsion = 9651.848978 eV Total energy + Delta-G solvation = -2240.376156 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.17896 -36.09829 -34.26289 -32.75957 -31.91187 -28.54837 -26.58448 -24.38141 -22.04710 -21.15187 -20.48594 -17.22068 -16.64855 -16.48942 -15.29346 -14.76695 -14.12662 -13.76194 -13.47634 -13.14819 -13.06880 -12.53062 -12.29956 -11.64868 -11.47285 -11.05635 -10.65821 -10.53782 -10.25110 -9.87552 -9.31029 -8.59354 -8.54027 -7.48954 -6.05532 -4.03856 1.57612 2.84629 2.87719 3.29691 3.36566 3.38114 4.28837 4.42099 4.87285 4.95833 5.17682 5.26582 5.36974 5.43119 5.56283 5.86808 5.90617 6.12732 6.21433 6.47325 6.74557 6.98835 7.58021 7.85914 7.90202 8.29118 8.64223 9.02528 9.55804 11.07758 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.062863 B = 0.007398 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.306562 B = 3783.938967 C = 3817.421493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.051 4.051 3 O -0.210 6.210 4 C 0.155 3.845 5 N -0.468 5.468 6 C 0.006 3.994 7 C 0.134 3.866 8 N -0.672 5.672 9 C 0.164 3.836 10 C -0.516 4.516 11 H 0.079 0.921 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.267 1.267 18 H 0.086 0.914 19 H 0.075 0.925 20 H 0.090 0.910 21 H 0.247 0.753 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.335 0.665 25 H -0.014 1.014 26 H 0.025 0.975 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 12.997 -10.804 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 O -0.097 6.097 4 C -0.071 4.071 5 N -0.196 5.196 6 C -0.114 4.114 7 C 0.004 3.996 8 N -0.303 5.303 9 C 0.037 3.963 10 C -0.555 4.555 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.706 3.294 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.192 1.192 18 H 0.105 0.895 19 H 0.094 0.906 20 H 0.109 0.891 21 H 0.263 0.737 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.152 0.848 25 H 0.003 0.997 26 H 0.043 0.957 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.186 12.328 -10.622 16.316 hybrid contribution -1.432 -0.152 -0.827 1.661 sum -0.246 12.176 -11.449 16.715 Atomic orbital electron populations 1.20279 0.84133 1.03975 1.04070 1.23212 0.94883 0.84266 1.08063 1.84379 1.18457 1.36525 1.70326 1.27962 0.85542 0.91365 1.02234 1.70352 1.23169 1.09855 1.16219 1.21548 0.87847 0.97127 1.04920 1.20201 0.98841 0.87537 0.93010 1.60459 1.55407 1.05189 1.09228 1.20031 0.93030 0.84876 0.98359 1.21039 1.45217 0.98274 0.90930 0.90301 1.24900 0.95017 0.97945 0.95427 1.69899 1.47753 1.18645 1.17601 0.86812 0.78504 0.81265 0.82857 1.20078 1.21215 1.19230 0.89524 0.90616 0.89100 0.73735 0.94475 0.89942 0.84812 0.99658 0.95734 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.22 36.01 0.37 -0.35 15 2 C -0.05 -0.73 7.39 -35.69 -0.26 -0.99 15 3 O -0.21 -2.85 10.77 5.38 0.06 -2.79 15 4 C 0.16 1.98 13.23 52.10 0.69 2.67 15 5 N -0.47 -7.92 11.30 -11.18 -0.13 -8.04 15 6 C 0.01 0.10 6.62 -82.81 -0.55 -0.45 15 7 C 0.13 2.41 6.02 -4.98 -0.03 2.38 15 8 N -0.67 -14.56 6.48 -116.34 -0.75 -15.31 15 9 C 0.16 4.05 4.51 -4.97 -0.02 4.03 15 10 C -0.52 -14.99 9.87 -34.44 -0.34 -15.33 15 11 H 0.08 2.49 8.06 -52.49 -0.42 2.07 15 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 13 N -0.90 -27.87 13.96 55.43 0.77 -27.10 15 14 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 15 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 15 18 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.09 0.91 7.17 -51.93 -0.37 0.54 15 21 H 0.25 1.76 8.06 -52.49 -0.42 1.33 15 22 H 0.04 0.59 7.17 -51.93 -0.37 0.22 15 23 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 24 H 0.33 6.95 8.71 -39.29 -0.34 6.61 15 25 H -0.01 -0.34 7.20 -51.93 -0.37 -0.71 15 26 H 0.02 0.61 7.57 -51.93 -0.39 0.22 15 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 240.72 15.07 3.63 3.63 Total: -1.00 -33.72 240.72 -4.47 -38.19 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.13 Total: 0.61 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.24 Total: -6.13 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.11 Total: -50.45 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.06 Total: -2.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.72 -4.47 -38.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397889490.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.426 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds