Wall clock time and date at job start Sun Mar 29 2020 21:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47021 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00088 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99599 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00215 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99777 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47631 * 89.99403 * 13 11 9 15 15 H 1.48504 * 109.47101 * 210.00107 * 13 11 9 16 16 H 1.48508 * 109.46813 * 329.99478 * 13 11 9 17 17 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 18 18 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 19 19 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 20 20 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 21 21 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 22 22 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 23 23 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 24 24 H 1.00903 * 110.99728 * 303.96073 * 7 6 5 25 25 H 1.09001 * 109.46894 * 300.00024 * 8 7 6 26 26 H 1.08997 * 109.47035 * 59.99900 * 8 7 6 27 27 H 0.97006 * 119.99718 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 6.3838 -2.6978 1.4244 9 6 6.7608 -2.9688 2.8581 10 1 6.1727 -2.5474 3.6600 11 6 7.8564 -3.7548 3.1460 12 7 8.5722 -4.2683 2.1695 13 14 8.3233 -4.0913 4.9232 14 1 7.6311 -5.3182 5.3931 15 1 9.7926 -4.2836 5.0211 16 1 7.9174 -2.9395 5.7682 17 8 2.2872 -1.0891 0.0005 18 1 -0.3634 0.0005 1.0276 19 1 -0.3633 0.8897 -0.5143 20 1 -0.3633 -0.8902 -0.5135 21 1 4.4157 1.3161 0.0011 22 1 4.5695 -2.4896 -0.5140 23 1 5.6081 -1.0440 -0.5130 24 1 5.3416 -0.9880 1.9020 25 1 6.1712 -3.6403 0.9198 26 1 7.2092 -2.1943 0.9211 27 1 9.3428 -4.8216 2.3722 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398011094.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:00 Heat of formation + Delta-G solvation = 15.542111 kcal Electronic energy + Delta-G solvation = -11682.332927 eV Core-core repulsion = 9441.709961 eV Total energy + Delta-G solvation = -2240.622966 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.08377 -35.67430 -34.52521 -32.83233 -31.72579 -28.93349 -26.30073 -24.00255 -22.03609 -21.48136 -20.75198 -17.02727 -16.55370 -16.26765 -14.99844 -14.56787 -14.23758 -13.77318 -13.38017 -13.13907 -12.96686 -12.66598 -12.14745 -11.56996 -11.35458 -11.07786 -10.80724 -10.75469 -10.34463 -10.02714 -9.30730 -8.57077 -8.47524 -7.48580 -6.09115 -4.11564 1.65573 2.83388 2.88453 3.29962 3.35670 3.39740 4.19313 4.39374 4.94214 5.16997 5.24733 5.27306 5.29582 5.46238 5.52216 5.65379 5.84732 6.05756 6.32706 6.51121 7.08290 7.28180 7.68432 7.90460 8.01805 8.22707 8.45756 8.96661 9.53613 11.01928 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.073924 B = 0.006294 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.676128 B = 4447.528411 C = 4573.057663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.171 3.829 3 N -0.486 5.486 4 C -0.051 4.051 5 C -0.015 4.015 6 C 0.136 3.864 7 N -0.686 5.686 8 C 0.194 3.806 9 C -0.517 4.517 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 O -0.194 6.194 18 H 0.090 0.910 19 H 0.096 0.904 20 H 0.085 0.915 21 H 0.181 0.819 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.334 0.666 25 H 0.032 0.968 26 H -0.009 1.009 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 6.952 -4.935 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.036 4.036 3 N -0.216 5.216 4 C -0.191 4.191 5 C -0.069 4.069 6 C 0.006 3.994 7 N -0.318 5.318 8 C 0.068 3.932 9 C -0.555 4.555 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.729 3.271 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 O -0.080 6.080 18 H 0.108 0.892 19 H 0.115 0.885 20 H 0.104 0.896 21 H 0.198 0.802 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.151 0.849 25 H 0.050 0.950 26 H 0.009 0.991 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.817 6.853 -4.906 14.514 hybrid contribution 1.418 -0.281 0.666 1.592 sum -10.399 6.572 -4.239 13.011 Atomic orbital electron populations 1.20173 0.81730 1.04648 1.04458 1.26190 0.96433 0.79055 1.01882 1.70363 1.02178 1.30459 1.18608 1.23013 0.94945 0.93126 1.07977 1.23736 0.83658 0.95209 1.04300 1.20360 0.87794 0.97081 0.94151 1.60741 1.41352 1.21197 1.08469 1.19620 0.84002 0.91794 0.97811 1.21143 1.11263 1.31176 0.91946 0.91854 1.24985 0.96108 0.95695 0.97712 1.69957 1.18295 1.33912 1.31478 0.86443 0.77411 0.78756 0.84481 1.20545 1.21222 1.19798 1.84415 1.16843 1.37417 1.69321 0.89172 0.88513 0.89591 0.80218 0.89662 0.92323 0.84935 0.95034 0.99073 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 36.00 0.38 -0.09 15 2 C 0.17 2.51 8.34 -12.95 -0.11 2.40 15 3 N -0.49 -7.87 11.29 -11.10 -0.13 -8.00 15 4 C -0.05 -0.82 11.80 -17.77 -0.21 -1.03 15 5 C -0.02 -0.26 6.90 -35.69 -0.25 -0.50 15 6 C 0.14 2.42 6.23 -4.97 -0.03 2.39 15 7 N -0.69 -14.82 6.48 -116.34 -0.75 -15.57 15 8 C 0.19 5.00 5.44 -4.98 -0.03 4.97 15 9 C -0.52 -14.60 9.32 -34.44 -0.32 -14.92 15 10 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 12 N -0.90 -26.53 13.29 55.43 0.74 -25.79 15 13 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 17 O -0.19 -3.29 10.78 5.34 0.06 -3.24 15 18 H 0.09 0.70 8.14 -51.93 -0.42 0.27 15 19 H 0.10 0.72 8.14 -51.93 -0.42 0.29 15 20 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.18 2.42 8.06 -52.49 -0.42 2.00 15 22 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.33 6.92 8.71 -39.29 -0.34 6.57 15 25 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 26 H -0.01 -0.23 8.14 -51.93 -0.42 -0.65 15 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 246.58 15.07 3.72 3.72 Total: -1.00 -31.78 246.58 -5.32 -37.10 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.27 Total: 0.45 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.66 Total: -5.27 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.14 Total: -49.36 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.06 Total: -3.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.78 -5.32 -37.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398011094.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.641 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds