Wall clock time and date at job start Sun Mar 29 2020 21:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47297 * 2 1 4 4 C 1.36935 * 119.99959 * 265.85021 * 3 2 1 5 5 H 1.08009 * 120.00021 * 146.16974 * 4 3 2 6 6 C 1.38806 * 120.00465 * 326.17351 * 4 3 2 7 7 N 1.31629 * 119.99706 * 337.73616 * 6 4 3 8 8 Si 1.86799 * 120.00629 * 157.74143 * 6 4 3 9 9 H 1.48494 * 109.47002 * 59.99623 * 8 6 4 10 10 H 1.48498 * 109.47357 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46710 * 299.99986 * 8 6 4 12 12 C 1.46498 * 120.00039 * 85.84836 * 3 2 1 13 13 C 1.50698 * 109.47183 * 90.00219 * 12 3 2 14 14 C 1.30523 * 124.44992 * 94.97518 * 13 12 3 15 15 C 1.51108 * 111.10597 * 180.27159 * 14 13 12 16 16 C 1.54802 * 104.64263 * 343.19364 * 15 14 13 17 17 C 1.51106 * 124.44836 * 275.00279 * 13 12 3 18 18 H 1.09005 * 109.46685 * 299.99878 * 1 2 3 19 19 H 1.08996 * 109.47038 * 59.99888 * 1 2 3 20 20 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46902 * 240.00227 * 2 1 3 22 22 H 1.08997 * 109.47563 * 120.00113 * 2 1 3 23 23 H 0.96997 * 120.00200 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.47149 * 330.00520 * 12 3 2 25 25 H 1.08994 * 109.47401 * 210.00482 * 12 3 2 26 26 H 1.07998 * 124.44870 * 359.97438 * 14 13 12 27 27 H 1.08995 * 110.38904 * 102.12730 * 15 14 13 28 28 H 1.09001 * 110.38274 * 224.50896 * 15 14 13 29 29 H 1.08998 * 111.25076 * 266.87921 * 16 15 14 30 30 H 1.08992 * 110.89335 * 142.88778 * 16 15 14 31 31 H 1.09001 * 110.38521 * 315.22509 * 17 13 12 32 32 H 1.08999 * 110.38968 * 77.48578 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3275 1.9981 -1.1828 5 1 2.1576 3.0583 -1.2995 6 6 2.8592 1.2610 -2.2319 7 7 3.4682 0.1190 -1.9916 8 14 2.7107 1.8894 -3.9847 9 1 3.3832 3.2086 -4.0962 10 1 3.3555 0.9257 -4.9124 11 1 1.2758 2.0338 -4.3388 12 6 2.1760 2.1024 1.2654 13 6 3.5660 1.8774 1.8021 14 6 4.5734 2.6833 1.6041 15 6 5.8255 2.1636 2.2716 16 6 5.3197 1.1062 3.2828 17 6 3.9768 0.6887 2.6397 18 1 -0.3633 0.5139 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 3.8395 -0.3963 -2.7247 24 1 1.4446 1.7362 1.9859 25 1 2.0191 3.1680 1.0983 26 1 4.5203 3.5989 1.0338 27 1 6.4852 1.7039 1.5357 28 1 6.3405 2.9703 2.7932 29 1 5.1620 1.5453 4.2678 30 1 6.0064 0.2615 3.3380 31 1 3.2317 0.4917 3.4105 32 1 4.1125 -0.1907 2.0102 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401045521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:02 Heat of formation + Delta-G solvation = 24.907087 kcal Electronic energy + Delta-G solvation = -12672.030019 eV Core-core repulsion = 10633.072154 eV Total energy + Delta-G solvation = -2038.957865 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.98237 -35.49655 -31.51403 -30.27160 -28.03340 -27.61650 -24.80341 -23.11065 -20.26426 -20.21112 -17.17198 -16.53397 -15.02580 -14.92449 -14.33816 -13.81833 -13.61538 -12.31286 -12.24597 -12.07818 -11.59537 -11.33511 -11.08892 -10.94785 -10.76147 -10.61808 -10.60588 -10.40175 -10.26699 -9.87216 -9.80877 -9.54818 -8.42092 -7.80435 -6.55087 -5.73085 -3.25087 3.18153 3.40188 3.45417 3.48510 4.54243 5.24516 5.32467 5.41726 5.50613 5.70090 6.02493 6.09195 6.23533 6.28710 6.34264 6.39302 6.45346 6.55445 6.63742 6.66014 6.71988 6.82319 6.87671 6.97557 7.32291 7.54200 7.80510 7.86357 7.94128 8.55711 9.24624 9.88150 10.45148 11.27413 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033949 B = 0.012821 C = 0.010705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.571349 B = 2183.336800 C = 2615.070203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 N -0.576 5.576 4 C -0.251 4.251 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.185 3.815 13 C -0.122 4.122 14 C -0.187 4.187 15 C -0.090 4.090 16 C -0.124 4.124 17 C -0.087 4.087 18 H 0.032 0.968 19 H 0.048 0.952 20 H 0.033 0.967 21 H 0.098 0.902 22 H 0.019 0.981 23 H 0.253 0.747 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 1.076 7.181 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.296 5.296 4 C -0.381 4.381 5 H 0.079 0.921 6 C -0.192 4.192 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.210 1.210 12 C 0.059 3.941 13 C -0.125 4.125 14 C -0.207 4.207 15 C -0.127 4.127 16 C -0.161 4.161 17 C -0.125 4.125 18 H 0.051 0.949 19 H 0.067 0.933 20 H 0.052 0.948 21 H 0.116 0.884 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.356 0.940 7.056 7.127 hybrid contribution 0.114 0.203 -1.071 1.096 sum 0.470 1.143 5.985 6.111 Atomic orbital electron populations 1.22312 1.00965 0.98620 1.00362 1.20949 0.89687 0.86411 1.01729 1.44002 1.73276 1.11896 1.00400 1.19047 1.35758 0.94004 0.89313 0.92149 1.25093 0.97030 0.97984 0.99070 1.69991 1.36470 1.15801 1.30682 0.86463 0.77891 0.78095 0.84921 1.20825 1.21684 1.20982 1.19759 0.89754 0.96339 0.88278 1.22969 0.99012 0.94209 0.96315 1.22721 0.94045 1.00845 1.03105 1.21244 0.97166 0.97200 0.97075 1.22441 0.97240 0.98431 0.98008 1.21232 0.95588 0.98134 0.97510 0.94914 0.93277 0.94757 0.88446 0.96257 0.93655 0.94236 0.93264 0.86933 0.91681 0.92725 0.91983 0.91981 0.92580 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 37.16 0.38 -3.00 16 2 C 0.14 3.34 5.97 -4.04 -0.02 3.31 16 3 N -0.58 -14.58 2.44 -174.62 -0.43 -15.01 16 4 C -0.25 -6.94 9.49 -15.06 -0.14 -7.09 16 5 H 0.06 1.67 7.92 -52.48 -0.42 1.25 16 6 C 0.01 0.22 4.93 -17.43 -0.09 0.14 16 7 N -0.89 -25.78 11.32 55.49 0.63 -25.16 16 8 Si 0.90 21.86 29.61 -169.99 -5.03 16.83 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.18 4.05 6.11 -5.20 -0.03 4.02 16 13 C -0.12 -2.55 5.74 -100.74 -0.58 -3.13 16 14 C -0.19 -3.79 10.58 -35.69 -0.38 -4.16 16 15 C -0.09 -1.54 6.82 -26.73 -0.18 -1.73 16 16 C -0.12 -1.96 7.20 -24.92 -0.18 -2.13 16 17 C -0.09 -1.62 6.76 -26.82 -0.18 -1.80 16 18 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 19 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 20 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.10 2.66 5.32 -51.93 -0.28 2.38 16 22 H 0.02 0.45 8.10 -51.93 -0.42 0.02 16 23 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 25 H 0.05 1.06 8.02 -51.93 -0.42 0.64 16 26 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 265.61 15.07 4.00 4.00 Total: -1.00 -28.89 265.61 -7.54 -36.43 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.31 Total: -1.53 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.40 Total: -15.58 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.20 Total: -40.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.89 -7.54 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401045521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.341 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds