Wall clock time and date at job start Sun Mar 29 2020 21:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47297 * 2 1 4 4 C 1.36935 * 119.99959 * 265.85021 * 3 2 1 5 5 H 1.08009 * 120.00021 * 146.16974 * 4 3 2 6 6 C 1.38806 * 120.00465 * 326.17351 * 4 3 2 7 7 N 1.31629 * 119.99706 * 337.73616 * 6 4 3 8 8 Si 1.86799 * 120.00629 * 157.74143 * 6 4 3 9 9 H 1.48494 * 109.47002 * 59.99623 * 8 6 4 10 10 H 1.48498 * 109.47357 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46710 * 299.99986 * 8 6 4 12 12 C 1.46498 * 120.00039 * 85.84836 * 3 2 1 13 13 C 1.50698 * 109.47183 * 90.00219 * 12 3 2 14 14 C 1.30523 * 124.44992 * 94.97518 * 13 12 3 15 15 C 1.51108 * 111.10597 * 180.27159 * 14 13 12 16 16 C 1.54802 * 104.64263 * 343.19364 * 15 14 13 17 17 C 1.51106 * 124.44836 * 275.00279 * 13 12 3 18 18 H 1.09005 * 109.46685 * 299.99878 * 1 2 3 19 19 H 1.08996 * 109.47038 * 59.99888 * 1 2 3 20 20 H 1.08998 * 109.47372 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46902 * 240.00227 * 2 1 3 22 22 H 1.08997 * 109.47563 * 120.00113 * 2 1 3 23 23 H 0.96997 * 120.00200 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.47149 * 330.00520 * 12 3 2 25 25 H 1.08994 * 109.47401 * 210.00482 * 12 3 2 26 26 H 1.07998 * 124.44870 * 359.97438 * 14 13 12 27 27 H 1.08995 * 110.38904 * 102.12730 * 15 14 13 28 28 H 1.09001 * 110.38274 * 224.50896 * 15 14 13 29 29 H 1.08998 * 111.25076 * 266.87921 * 16 15 14 30 30 H 1.08992 * 110.89335 * 142.88778 * 16 15 14 31 31 H 1.09001 * 110.38521 * 315.22509 * 17 13 12 32 32 H 1.08999 * 110.38968 * 77.48578 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3275 1.9981 -1.1828 5 1 2.1576 3.0583 -1.2995 6 6 2.8592 1.2610 -2.2319 7 7 3.4682 0.1190 -1.9916 8 14 2.7107 1.8894 -3.9847 9 1 3.3832 3.2086 -4.0962 10 1 3.3555 0.9257 -4.9124 11 1 1.2758 2.0338 -4.3388 12 6 2.1760 2.1024 1.2654 13 6 3.5660 1.8774 1.8021 14 6 4.5734 2.6833 1.6041 15 6 5.8255 2.1636 2.2716 16 6 5.3197 1.1062 3.2828 17 6 3.9768 0.6887 2.6397 18 1 -0.3633 0.5139 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 3.8395 -0.3963 -2.7247 24 1 1.4446 1.7362 1.9859 25 1 2.0191 3.1680 1.0983 26 1 4.5203 3.5989 1.0338 27 1 6.4852 1.7039 1.5357 28 1 6.3405 2.9703 2.7932 29 1 5.1620 1.5453 4.2678 30 1 6.0064 0.2615 3.3380 31 1 3.2317 0.4917 3.4105 32 1 4.1125 -0.1907 2.0102 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401045521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:02 Heat of formation + Delta-G solvation = 10.090868 kcal Electronic energy + Delta-G solvation = -12672.672499 eV Core-core repulsion = 10633.072154 eV Total energy + Delta-G solvation = -2039.600344 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51897 -37.35285 -33.54621 -31.96193 -29.75904 -29.11670 -26.66019 -24.91459 -22.17461 -21.59355 -18.80322 -18.53901 -16.87514 -16.42367 -16.01227 -15.66393 -15.47597 -14.08859 -14.02746 -13.51885 -13.35052 -13.16346 -12.73722 -12.66405 -12.48597 -12.34587 -12.09397 -11.96198 -11.86660 -11.73617 -11.56582 -11.45090 -10.49396 -9.40424 -8.57844 -7.81517 -5.37569 1.44867 1.45821 1.52212 1.59871 2.52718 3.25888 3.80428 3.87642 3.93458 4.25022 4.50985 4.56627 4.64654 4.74007 4.85886 4.90186 4.95543 4.96961 5.01725 5.07791 5.18483 5.20608 5.31833 5.45303 5.51769 5.66130 5.86701 5.96281 6.32951 6.46640 7.17992 7.88608 8.39886 9.15390 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033949 B = 0.012821 C = 0.010705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.571349 B = 2183.336800 C = 2615.070203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.137 3.863 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.055 0.945 6 C -0.039 4.039 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.182 3.818 13 C -0.144 4.144 14 C -0.194 4.194 15 C -0.090 4.090 16 C -0.113 4.113 17 C -0.086 4.086 18 H 0.048 0.952 19 H 0.033 0.967 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.022 0.978 23 H 0.250 0.750 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 1.355 8.272 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 N -0.311 5.311 4 C -0.391 4.391 5 H 0.072 0.928 6 C -0.236 4.236 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.057 3.943 13 C -0.147 4.147 14 C -0.214 4.214 15 C -0.127 4.127 16 C -0.150 4.150 17 C -0.123 4.123 18 H 0.067 0.933 19 H 0.052 0.948 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.331 1.233 8.166 8.265 hybrid contribution 0.105 0.164 -1.353 1.367 sum 0.436 1.397 6.814 6.969 Atomic orbital electron populations 1.22131 0.98198 1.00252 1.00320 1.20884 0.91829 0.85827 1.00299 1.44160 1.73778 1.12219 1.00954 1.19236 1.35209 0.93924 0.90727 0.92773 1.25739 0.97170 0.98380 1.02275 1.70129 1.37660 1.16949 1.31239 0.85533 0.77841 0.77509 0.80748 1.20338 1.21891 1.20493 1.19829 0.91239 0.95840 0.87425 1.23079 0.98490 0.95590 0.97544 1.23026 0.95503 1.00401 1.02453 1.21283 0.95686 0.98438 0.97264 1.22443 0.95600 0.98521 0.98439 1.21217 0.97860 0.95925 0.97323 0.93321 0.94809 0.92307 0.91646 0.95917 0.94119 0.92394 0.93626 0.87972 0.92767 0.89965 0.89348 0.90446 0.90739 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 10.24 71.98 0.74 -5.27 16 2 C 0.14 6.63 5.97 86.38 0.52 7.14 16 3 N -0.59 -29.95 2.44 -706.37 -1.72 -31.67 16 4 C -0.26 -14.52 9.49 84.03 0.80 -13.72 16 5 H 0.05 3.02 7.92 -2.91 -0.02 3.00 16 6 C -0.04 -2.17 4.93 84.86 0.42 -1.76 16 7 N -0.92 -54.18 11.32 21.65 0.25 -53.93 16 8 Si 0.96 45.33 29.61 68.60 2.03 47.37 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.18 7.88 6.11 85.63 0.52 8.40 16 13 C -0.14 -5.92 5.74 -15.87 -0.09 -6.01 16 14 C -0.19 -7.69 10.58 26.27 0.28 -7.41 16 15 C -0.09 -2.90 6.82 30.59 0.21 -2.69 16 16 C -0.11 -3.23 7.20 31.77 0.23 -3.00 16 17 C -0.09 -3.06 6.76 30.53 0.21 -2.85 16 18 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 19 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.07 3.63 5.32 -2.39 -0.01 3.62 16 22 H 0.02 1.05 8.10 -2.39 -0.02 1.03 16 23 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 24 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 25 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16 26 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -61.39 265.61 5.44 -55.95 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.06 Total: 9.46 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 3.82 Total: -27.17 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.48 Total: -85.61 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.37 kcal Total: -61.39 5.44 -55.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401045521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.043 kcal (2) G-P(sol) polarization free energy of solvation -61.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds