Wall clock time and date at job start Sun Mar 29 2020 21:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46892 * 111.00400 * 2 1 4 4 C 1.50697 * 109.47509 * 293.95616 * 3 2 1 5 5 H 1.08002 * 119.99622 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00585 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99402 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47283 * 59.99802 * 8 6 4 10 10 H 1.48497 * 109.46769 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46901 * 299.99433 * 8 6 4 12 12 C 1.38335 * 110.99717 * 123.95965 * 2 1 3 13 13 N 1.31581 * 126.07107 * 292.54923 * 12 2 1 14 14 C 1.33369 * 109.68969 * 179.89512 * 13 12 2 15 15 N 1.30582 * 109.11721 * 0.37801 * 14 13 12 16 16 N 1.34986 * 126.07483 * 112.86522 * 12 2 1 17 17 C 1.46501 * 126.82659 * 359.97438 * 16 12 2 18 18 H 1.09001 * 109.46800 * 65.90698 * 1 2 3 19 19 H 1.08997 * 109.47587 * 185.91181 * 1 2 3 20 20 H 1.09003 * 109.46722 * 305.91466 * 1 2 3 21 21 H 1.08999 * 109.47493 * 173.95515 * 3 2 1 22 22 H 1.08997 * 109.47175 * 53.95490 * 3 2 1 23 23 H 0.96999 * 119.99606 * 180.02562 * 7 6 4 24 24 H 1.08007 * 125.43827 * 180.15837 * 14 13 12 25 25 H 1.09000 * 109.46992 * 94.48922 * 17 16 12 26 26 H 1.09000 * 109.46706 * 214.48319 * 17 16 12 27 27 H 1.08997 * 109.47120 * 334.48928 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0279 3.3491 -1.5289 7 7 2.7131 4.0014 -0.6153 8 14 1.5828 4.1870 -3.1380 9 1 0.1056 4.2246 -3.2846 10 1 2.1152 5.5732 -3.1380 11 1 2.1735 3.4294 -4.2704 12 6 1.9647 -0.7214 1.0712 13 7 1.8615 -0.3924 2.3410 14 6 2.4527 -1.3201 3.0951 15 7 2.9477 -2.2483 2.3214 16 7 2.6453 -1.8849 0.9991 17 6 2.9984 -2.6218 -0.2168 18 1 -0.3633 0.4195 -0.9382 19 1 -0.3634 -1.0221 0.1058 20 1 -0.3633 0.6028 0.8323 21 1 3.0798 1.3443 0.1082 22 1 1.5612 1.9272 0.8309 23 1 2.9877 4.9175 -0.7773 24 1 2.5153 -1.3042 4.1732 25 1 4.0035 -2.3417 -0.5324 26 1 2.9662 -3.6925 -0.0150 27 1 2.2885 -2.3795 -1.0076 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590568569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:59 Heat of formation + Delta-G solvation = 103.126945 kcal Electronic energy + Delta-G solvation = -12328.855559 eV Core-core repulsion = 10124.323307 eV Total energy + Delta-G solvation = -2204.532252 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.55712 -36.57263 -33.52678 -32.64010 -29.98993 -27.44484 -26.92857 -25.16032 -22.36808 -21.43419 -19.60910 -16.94305 -16.13824 -15.65618 -15.13028 -14.54405 -14.24537 -13.55480 -13.19274 -12.76506 -12.71294 -12.11844 -11.69183 -11.29439 -11.08860 -10.83886 -10.64145 -10.14361 -9.58028 -9.46154 -9.27062 -8.95054 -8.55731 -7.92940 -6.10501 -4.14752 2.03491 2.64516 3.29436 3.33975 3.35551 3.38696 4.30034 4.51666 4.99718 5.07771 5.25254 5.45912 5.64172 5.74877 5.87254 6.22561 6.51724 6.67440 6.69671 6.88692 7.18952 7.31144 7.66465 7.76736 7.98940 8.33998 8.61041 8.90551 9.49360 11.00175 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056279 B = 0.009397 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.405303 B = 2978.894735 C = 3100.378411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.479 5.479 3 C 0.209 3.791 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.465 3.535 13 N -0.565 5.565 14 C 0.199 3.801 15 N -0.336 5.336 16 N -0.375 5.375 17 C 0.107 3.893 18 H 0.087 0.913 19 H 0.045 0.955 20 H 0.038 0.962 21 H 0.029 0.971 22 H 0.016 0.984 23 H 0.264 0.736 24 H 0.211 0.789 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 -9.643 0.920 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.206 5.206 3 C 0.085 3.915 4 C -0.557 4.557 5 H 0.085 0.915 6 C -0.143 4.143 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.100 3.900 13 N -0.297 5.297 14 C -0.105 4.105 15 N -0.166 5.166 16 N -0.166 5.166 17 C -0.036 4.036 18 H 0.106 0.894 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.047 0.953 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.227 0.773 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.272 -10.063 0.823 10.177 hybrid contribution -0.284 0.931 -0.322 1.026 sum -1.557 -9.132 0.501 9.277 Atomic orbital electron populations 1.22201 0.84690 0.99724 1.02996 1.59473 1.09254 1.19574 1.32342 1.19832 0.95430 0.78220 0.97991 1.21027 1.36076 0.97241 1.01339 0.91539 1.24983 0.95018 0.97147 0.97190 1.69966 1.37497 1.11615 1.34034 0.86476 0.78789 0.78364 0.83282 1.20085 1.21262 1.20108 1.22387 0.91605 0.86162 0.89801 1.71150 1.27786 1.29453 1.01318 1.25703 0.95205 0.88765 1.00876 1.77885 1.26650 1.25054 0.86966 1.50199 1.41835 1.18415 1.06167 1.21813 1.02619 0.96139 0.82986 0.89408 0.93621 0.94338 0.95293 0.96622 0.92597 0.77259 0.90679 0.90149 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 9.26 60.06 0.56 1.55 15 2 N -0.48 -10.50 4.64 -184.20 -0.85 -11.36 15 3 C 0.21 5.50 4.57 -4.98 -0.02 5.48 15 4 C -0.52 -14.08 8.59 -34.44 -0.30 -14.38 15 5 H 0.07 1.73 7.10 -52.49 -0.37 1.36 15 6 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 7 N -0.89 -26.30 13.29 55.43 0.74 -25.56 15 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 9 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 12 C 0.47 9.81 6.30 -320.79 -2.02 7.79 15 13 N -0.57 -12.04 11.12 -15.20 -0.17 -12.21 15 14 C 0.20 3.54 13.02 -91.81 -1.20 2.35 15 15 N -0.34 -6.15 12.68 29.29 0.37 -5.77 15 16 N -0.37 -6.95 4.05 -68.74 -0.28 -7.23 15 17 C 0.11 1.48 11.48 59.85 0.69 2.17 15 18 H 0.09 1.65 7.04 -51.93 -0.37 1.28 15 19 H 0.04 0.76 8.06 -51.93 -0.42 0.34 15 20 H 0.04 0.77 8.06 -51.93 -0.42 0.35 15 21 H 0.03 0.84 8.05 -51.93 -0.42 0.42 15 22 H 0.02 0.46 8.06 -51.93 -0.42 0.04 15 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 24 H 0.21 2.74 8.06 -52.48 -0.42 2.32 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.10 1.29 8.04 -51.93 -0.42 0.88 15 LS Contribution 242.39 15.07 3.65 3.65 Total: -1.00 -31.78 242.39 -7.18 -38.96 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -3.23 Total: -2.92 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -2.39 Total: 6.49 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.19 Total: -62.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.78 -7.18 -38.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590568569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.091 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds