Wall clock time and date at job start Sun Mar 29 2020 21:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46892 * 111.00400 * 2 1 4 4 C 1.50697 * 109.47509 * 293.95616 * 3 2 1 5 5 H 1.08002 * 119.99622 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00585 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99402 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47283 * 59.99802 * 8 6 4 10 10 H 1.48497 * 109.46769 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46901 * 299.99433 * 8 6 4 12 12 C 1.38335 * 110.99717 * 123.95965 * 2 1 3 13 13 N 1.31581 * 126.07107 * 292.54923 * 12 2 1 14 14 C 1.33369 * 109.68969 * 179.89512 * 13 12 2 15 15 N 1.30582 * 109.11721 * 0.37801 * 14 13 12 16 16 N 1.34986 * 126.07483 * 112.86522 * 12 2 1 17 17 C 1.46501 * 126.82659 * 359.97438 * 16 12 2 18 18 H 1.09001 * 109.46800 * 65.90698 * 1 2 3 19 19 H 1.08997 * 109.47587 * 185.91181 * 1 2 3 20 20 H 1.09003 * 109.46722 * 305.91466 * 1 2 3 21 21 H 1.08999 * 109.47493 * 173.95515 * 3 2 1 22 22 H 1.08997 * 109.47175 * 53.95490 * 3 2 1 23 23 H 0.96999 * 119.99606 * 180.02562 * 7 6 4 24 24 H 1.08007 * 125.43827 * 180.15837 * 14 13 12 25 25 H 1.09000 * 109.46992 * 94.48922 * 17 16 12 26 26 H 1.09000 * 109.46706 * 214.48319 * 17 16 12 27 27 H 1.08997 * 109.47120 * 334.48928 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0279 3.3491 -1.5289 7 7 2.7131 4.0014 -0.6153 8 14 1.5828 4.1870 -3.1380 9 1 0.1056 4.2246 -3.2846 10 1 2.1152 5.5732 -3.1380 11 1 2.1735 3.4294 -4.2704 12 6 1.9647 -0.7214 1.0712 13 7 1.8615 -0.3924 2.3410 14 6 2.4527 -1.3201 3.0951 15 7 2.9477 -2.2483 2.3214 16 7 2.6453 -1.8849 0.9991 17 6 2.9984 -2.6218 -0.2168 18 1 -0.3633 0.4195 -0.9382 19 1 -0.3634 -1.0221 0.1058 20 1 -0.3633 0.6028 0.8323 21 1 3.0798 1.3443 0.1082 22 1 1.5612 1.9272 0.8309 23 1 2.9877 4.9175 -0.7773 24 1 2.5153 -1.3042 4.1732 25 1 4.0035 -2.3417 -0.5324 26 1 2.9662 -3.6925 -0.0150 27 1 2.2885 -2.3795 -1.0076 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590568569.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:59 Heat of formation + Delta-G solvation = 82.720443 kcal Electronic energy + Delta-G solvation = -12329.740451 eV Core-core repulsion = 10124.323307 eV Total energy + Delta-G solvation = -2205.417144 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.05335 -38.31973 -34.93681 -34.68902 -31.55727 -29.41409 -28.25785 -26.86113 -24.27531 -22.88179 -21.21742 -18.77011 -17.88252 -17.26341 -16.78443 -16.35918 -15.63478 -15.24341 -14.89167 -14.08589 -14.02201 -13.99013 -13.34008 -12.92024 -12.86748 -12.58758 -12.43553 -12.10058 -11.48147 -11.10902 -10.73248 -10.65195 -10.44808 -9.76372 -8.22476 -6.35562 0.51579 1.25245 1.46523 1.49859 1.57902 1.89266 2.41186 2.92130 3.12082 3.65019 3.70820 4.29428 4.40265 4.47422 4.63230 4.69720 4.87796 5.03924 5.10546 5.27836 5.37389 5.52543 5.67321 5.86442 5.95319 6.47813 6.77955 7.10876 7.34794 8.89427 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056279 B = 0.009397 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.405303 B = 2978.894735 C = 3100.378411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.474 5.474 3 C 0.232 3.768 4 C -0.529 4.529 5 H 0.080 0.920 6 C 0.003 3.997 7 N -0.936 5.936 8 Si 0.979 3.021 9 H -0.262 1.262 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.440 3.560 13 N -0.599 5.599 14 C 0.198 3.802 15 N -0.336 5.336 16 N -0.370 5.370 17 C 0.097 3.903 18 H 0.092 0.908 19 H 0.075 0.925 20 H 0.023 0.977 21 H -0.008 1.008 22 H -0.021 1.021 23 H 0.266 0.734 24 H 0.251 0.749 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 -10.687 -0.161 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.200 5.200 3 C 0.107 3.893 4 C -0.567 4.567 5 H 0.098 0.902 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.803 3.197 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.075 3.925 13 N -0.332 5.332 14 C -0.105 4.105 15 N -0.166 5.166 16 N -0.162 5.162 17 C -0.043 4.043 18 H 0.110 0.890 19 H 0.094 0.906 20 H 0.042 0.958 21 H 0.010 0.990 22 H -0.003 1.003 23 H 0.075 0.925 24 H 0.267 0.733 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.799 -11.158 -0.268 11.305 hybrid contribution -0.088 1.165 0.093 1.172 sum -1.887 -9.993 -0.175 10.171 Atomic orbital electron populations 1.22241 0.83081 1.01376 1.02550 1.59323 1.10612 1.16958 1.33151 1.19324 0.92941 0.80439 0.96641 1.21375 1.35988 0.97699 1.01679 0.90237 1.26006 0.94610 0.97914 1.01039 1.70122 1.38836 1.12046 1.36506 0.85284 0.79087 0.76878 0.78454 1.18681 1.21308 1.18883 1.22321 0.93174 0.87340 0.89705 1.71077 1.29014 1.31028 1.02046 1.26488 0.94009 0.87543 1.02483 1.77859 1.26499 1.25290 0.86977 1.50483 1.40548 1.17818 1.07347 1.22185 1.03109 0.97488 0.81563 0.88978 0.90615 0.95837 0.98996 1.00320 0.92518 0.73304 0.90000 0.87118 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.06 9.26 127.69 1.18 3.25 15 2 N -0.47 -20.79 4.64 -736.69 -3.42 -24.21 15 3 C 0.23 12.57 4.57 85.56 0.39 12.96 15 4 C -0.53 -28.87 8.59 25.60 0.22 -28.65 15 5 H 0.08 4.04 7.10 -2.91 -0.02 4.02 15 6 C 0.00 0.17 5.46 84.66 0.46 0.63 15 7 N -0.94 -56.21 13.29 21.45 0.28 -55.93 15 8 Si 0.98 42.53 29.54 68.60 2.03 44.55 15 9 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 15 11 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 12 C 0.44 18.45 6.30 260.78 1.64 20.09 15 13 N -0.60 -25.49 11.12 -202.01 -2.25 -27.73 15 14 C 0.20 6.80 13.02 180.76 2.35 9.15 15 15 N -0.34 -11.75 12.68 -61.24 -0.78 -12.53 15 16 N -0.37 -13.24 4.05 -371.38 -1.50 -14.75 15 17 C 0.10 2.49 11.48 127.77 1.47 3.95 15 18 H 0.09 3.35 7.04 -2.39 -0.02 3.33 15 19 H 0.08 2.38 8.06 -2.39 -0.02 2.36 15 20 H 0.02 0.94 8.06 -2.39 -0.02 0.92 15 21 H -0.01 -0.49 8.05 -2.39 -0.02 -0.51 15 22 H -0.02 -1.28 8.06 -2.39 -0.02 -1.30 15 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 24 H 0.25 5.96 8.06 -2.91 -0.02 5.94 15 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.10 2.55 8.04 -2.39 -0.02 2.53 15 Total: -1.00 -68.78 242.39 3.24 -65.54 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.15 Total: 3.67 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.72 Total: 21.39 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -7.66 Total: -135.15 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.78 3.24 -65.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590568569.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.259 kcal (2) G-P(sol) polarization free energy of solvation -68.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds