Wall clock time and date at job start Sun Mar 29 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99850 * 2 1 4 4 H 1.09000 * 109.86767 * 358.99574 * 3 2 1 5 5 O 1.43741 * 109.88119 * 237.83108 * 3 2 1 6 6 C 1.44382 * 106.97022 * 267.09194 * 5 3 2 7 7 C 1.54995 * 103.49286 * 319.93435 * 6 5 3 8 8 C 1.54103 * 109.87681 * 119.99368 * 3 2 1 9 9 H 1.08993 * 110.48983 * 358.59276 * 8 3 2 10 10 N 1.46898 * 110.48867 * 236.06960 * 8 3 2 11 11 C 1.46903 * 110.99849 * 155.00403 * 10 8 3 12 12 C 1.50694 * 109.47066 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 H 1.08001 * 119.99657 * 179.97438 * 1 2 3 21 21 H 1.07999 * 119.99715 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.00230 * 179.97438 * 2 1 3 23 23 H 1.08995 * 110.62194 * 78.43940 * 6 5 3 24 24 H 1.09007 * 110.61596 * 201.27626 * 6 5 3 25 25 H 1.09002 * 110.90852 * 278.82860 * 7 6 5 26 26 H 1.08996 * 110.90665 * 155.22370 * 7 6 5 27 27 H 1.00895 * 110.99776 * 278.95707 * 10 8 3 28 28 H 1.09007 * 109.47052 * 59.99769 * 11 10 8 29 29 H 1.09003 * 109.46808 * 300.00462 * 11 10 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3611 2.1384 -0.0180 5 8 2.9312 1.3687 -1.1442 6 6 4.2186 0.8670 -0.7252 7 6 4.3945 1.4633 0.6946 8 6 2.9529 1.3967 1.2551 9 1 2.8246 0.5122 1.8790 10 7 2.6414 2.6125 2.0185 11 6 2.9962 2.4502 3.4348 12 6 2.6624 3.7142 4.1843 13 1 2.2304 4.5544 3.6609 14 6 2.9096 3.7986 5.5381 15 7 3.4361 2.7758 6.1755 16 14 2.4966 5.3658 6.4670 17 1 3.6697 6.2762 6.4482 18 1 1.3401 6.0351 5.8190 19 1 2.1516 5.0319 7.8723 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5399 0.9353 -0.0004 22 1 1.8501 -0.9353 0.0004 23 1 4.2119 -0.2222 -0.6859 24 1 5.0043 1.2209 -1.3929 25 1 4.7445 2.4944 0.6428 26 1 5.0725 0.8533 1.2914 27 1 3.1017 3.4172 1.6204 28 1 4.0637 2.2472 3.5210 29 1 2.4329 1.6181 3.8574 30 1 3.6104 2.8353 7.1278 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:49 Heat of formation + Delta-G solvation = -50.358839 kcal Electronic energy + Delta-G solvation = -12454.912531 eV Core-core repulsion = 10249.546318 eV Total energy + Delta-G solvation = -2205.366213 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74822 -36.73439 -34.70563 -34.44252 -31.66102 -29.40744 -27.44032 -24.05538 -23.54498 -22.02285 -20.77805 -18.66646 -17.49441 -17.30036 -16.53919 -16.31597 -15.42705 -14.99481 -14.67203 -14.41853 -13.96762 -13.54693 -13.36102 -12.81367 -12.76435 -12.59743 -12.34578 -12.20996 -11.93324 -11.83659 -11.35647 -10.74033 -10.62153 -10.35735 -9.12336 -8.24229 -6.35377 1.31169 1.40822 1.42314 1.54208 2.38957 3.08803 3.10567 3.33656 3.67467 3.93533 4.11263 4.18082 4.25836 4.29961 4.54623 4.77555 4.82351 4.88802 5.00158 5.03381 5.14166 5.25016 5.60299 5.65267 5.82399 5.92452 6.00017 6.40124 6.66693 6.85604 7.35553 8.87199 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049619 B = 0.007885 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.159394 B = 3550.022133 C = 3783.063852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.186 4.186 3 C 0.114 3.886 4 H 0.094 0.906 5 O -0.384 6.384 6 C 0.052 3.948 7 C -0.181 4.181 8 C 0.060 3.940 9 H 0.073 0.927 10 N -0.679 5.679 11 C 0.213 3.787 12 C -0.538 4.538 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.973 3.027 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.281 1.281 20 H 0.121 0.879 21 H 0.097 0.903 22 H 0.118 0.882 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.337 0.663 28 H -0.034 1.034 29 H -0.001 1.001 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -4.255 -11.417 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C 0.056 3.944 4 H 0.112 0.888 5 O -0.304 6.304 6 C -0.025 4.025 7 C -0.220 4.220 8 C -0.051 4.051 9 H 0.092 0.908 10 N -0.310 5.310 11 C 0.085 3.915 12 C -0.576 4.576 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.797 3.203 17 H -0.196 1.196 18 H -0.190 1.190 19 H -0.207 1.207 20 H 0.139 0.861 21 H 0.116 0.884 22 H 0.136 0.864 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.155 0.845 28 H -0.016 1.016 29 H 0.017 0.983 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.107 -4.402 -11.350 12.224 hybrid contribution 0.978 0.462 1.062 1.516 sum -0.129 -3.940 -10.288 11.017 Atomic orbital electron populations 1.24052 0.95538 1.02971 0.97887 1.23299 0.96943 0.98131 1.02103 1.21843 0.91956 0.96263 0.84326 0.88818 1.88889 1.22553 1.85352 1.33578 1.23608 0.85869 0.98853 0.94146 1.23820 0.97583 1.02487 0.98125 1.22969 0.93051 0.94348 0.94767 0.90823 1.60531 1.63168 1.03967 1.03295 1.19193 0.91945 0.96121 0.84220 1.21547 1.41504 1.00511 0.94070 0.91811 1.25943 0.94785 1.00273 0.98617 1.70084 1.44740 1.32452 1.09984 0.85332 0.78872 0.78721 0.77376 1.19632 1.18962 1.20659 0.86137 0.88440 0.86393 0.90843 0.87000 0.90848 0.90054 0.84471 1.01646 0.98324 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 14.32 67.78 0.97 -3.21 16 2 C -0.19 -5.19 8.87 25.64 0.23 -4.96 16 3 C 0.11 3.65 3.64 30.22 0.11 3.76 16 4 H 0.09 3.21 7.60 -2.39 -0.02 3.19 16 5 O -0.38 -11.80 11.18 -148.98 -1.67 -13.47 16 6 C 0.05 1.29 7.66 72.66 0.56 1.84 16 7 C -0.18 -5.45 6.83 31.90 0.22 -5.23 16 8 C 0.06 2.15 2.99 45.91 0.14 2.29 16 9 H 0.07 2.81 7.37 -2.39 -0.02 2.79 16 10 N -0.68 -29.58 6.22 -490.45 -3.05 -32.62 16 11 C 0.21 11.40 5.30 85.55 0.45 11.86 16 12 C -0.54 -30.81 9.32 25.60 0.24 -30.57 16 13 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 14 C 0.00 0.13 5.46 84.66 0.46 0.59 16 15 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 16 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 21 H 0.10 2.45 7.85 -2.91 -0.02 2.43 16 22 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 23 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.07 2.28 7.57 -2.39 -0.02 2.26 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.34 14.09 8.09 -89.70 -0.73 13.36 16 28 H -0.03 -1.94 8.14 -2.38 -0.02 -1.96 16 29 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -63.43 257.28 1.35 -62.07 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.38 Total: 17.27 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.37 Total: -23.64 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.76 Total: -88.53 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.67 Total: -13.47 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.43 1.35 -62.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.714 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds