Wall clock time and date at job start Sun Mar 29 2020 21:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 119.99936 * 2 1 4 4 C 1.52999 * 109.47219 * 122.70867 * 3 2 1 5 5 N 1.46498 * 110.81687 * 301.22008 * 4 3 2 6 6 C 1.36939 * 119.99858 * 298.29976 * 5 4 3 7 7 H 1.08000 * 120.00315 * 355.89389 * 6 5 4 8 8 C 1.38816 * 119.99832 * 175.89910 * 6 5 4 9 9 N 1.31613 * 120.00328 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99607 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46990 * 90.00210 * 10 8 6 12 12 H 1.48502 * 109.47019 * 209.99689 * 10 8 6 13 13 H 1.48498 * 109.47407 * 329.99588 * 10 8 6 14 14 C 1.54890 * 110.75407 * 64.55362 * 4 3 2 15 15 C 1.54266 * 104.19712 * 156.25733 * 14 4 3 16 16 C 1.53874 * 106.59920 * 336.38938 * 15 14 4 17 17 C 1.54273 * 106.59854 * 0.02562 * 16 15 14 18 18 H 1.07999 * 120.00254 * 359.97438 * 1 2 3 19 19 H 1.08006 * 119.99571 * 179.97438 * 1 2 3 20 20 H 1.07999 * 120.00254 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.47168 * 2.71196 * 3 2 1 22 22 H 1.09001 * 109.47415 * 242.70895 * 3 2 1 23 23 H 0.96998 * 120.00014 * 118.30412 * 5 4 3 24 24 H 0.96995 * 120.00525 * 179.97438 * 9 8 6 25 25 H 1.08999 * 110.48880 * 37.57963 * 14 4 3 26 26 H 1.09004 * 110.48832 * 274.93274 * 14 4 3 27 27 H 1.09006 * 110.03355 * 95.67022 * 15 14 4 28 28 H 1.08992 * 110.03598 * 217.10521 * 15 14 4 29 29 H 1.09007 * 110.02977 * 119.27969 * 16 15 14 30 30 H 1.08994 * 110.03338 * 240.71049 * 16 15 14 31 31 H 1.08998 * 110.48837 * 142.28484 * 17 16 15 32 32 H 1.09002 * 110.47853 * 264.93028 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9935 1.3571 1.2137 5 7 2.2327 1.2240 2.4586 6 6 1.2878 2.1591 2.7869 7 1 1.1494 3.0293 2.1624 8 6 0.5078 1.9887 3.9225 9 7 0.6761 0.9281 4.6834 10 14 -0.7806 3.2648 4.3706 11 1 -2.0731 2.9086 3.7320 12 1 -0.9505 3.3000 5.8455 13 1 -0.3427 4.6001 3.8908 14 6 4.0839 0.2613 1.1170 15 6 5.2350 0.7944 1.9948 16 6 5.0689 2.3229 2.0567 17 6 3.8223 2.6653 1.2148 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9354 -0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3561 2.1330 0.0486 22 1 2.6532 1.3842 -0.9133 23 1 2.3984 0.4734 3.0504 24 1 0.1314 0.8091 5.4771 25 1 4.4146 0.1422 0.0852 26 1 3.7106 -0.6843 1.5104 27 1 5.1675 0.3707 2.9969 28 1 6.1952 0.5411 1.5457 29 1 4.9208 2.6409 3.0888 30 1 5.9486 2.8113 1.6377 31 1 3.2585 3.4741 1.6795 32 1 4.1105 2.9344 0.1987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595780284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:58 Heat of formation + Delta-G solvation = 13.215984 kcal Electronic energy + Delta-G solvation = -12859.015506 eV Core-core repulsion = 10819.550677 eV Total energy + Delta-G solvation = -2039.464829 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.33829 -33.89079 -32.98872 -30.28096 -28.11085 -27.87446 -24.35388 -23.28806 -20.12607 -18.98142 -18.13834 -16.80053 -15.43340 -14.64722 -14.37083 -13.97009 -13.32570 -12.81708 -12.60628 -12.33076 -11.67002 -11.24598 -10.93818 -10.80598 -10.70509 -10.45703 -10.40212 -10.15446 -10.02880 -9.78700 -9.58392 -9.43027 -8.82585 -8.42209 -6.82140 -5.67159 -2.93356 3.16157 3.47316 3.52725 3.53911 4.66297 5.26015 5.32589 5.38999 5.67978 5.77042 5.84099 5.97499 6.03908 6.14932 6.26447 6.28077 6.35225 6.44955 6.53018 6.59216 6.63709 6.79998 6.89872 6.93783 7.02571 7.18951 7.44885 7.65474 7.79682 8.52296 9.63065 10.23521 10.58383 11.55979 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.014457 C = 0.011683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.911244 B = 1936.337812 C = 2395.975413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.095 4.095 4 C 0.205 3.795 5 N -0.706 5.706 6 C -0.222 4.222 7 H 0.067 0.933 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.294 1.294 13 H -0.284 1.284 14 C -0.122 4.122 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.134 4.134 18 H 0.090 0.910 19 H 0.082 0.918 20 H 0.093 0.907 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.383 0.617 24 H 0.252 0.748 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.852 -0.214 -8.052 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.141 4.141 3 C -0.134 4.134 4 C 0.113 3.887 5 N -0.346 5.346 6 C -0.353 4.353 7 H 0.085 0.915 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.730 3.270 11 H -0.219 1.219 12 H -0.220 1.220 13 H -0.210 1.210 14 C -0.160 4.160 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.174 4.174 18 H 0.109 0.891 19 H 0.100 0.900 20 H 0.111 0.889 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.217 0.783 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.736 -0.077 -8.014 9.855 hybrid contribution -0.807 0.424 0.651 1.121 sum 4.928 0.347 -7.363 8.866 Atomic orbital electron populations 1.23540 0.96110 1.00610 1.02924 1.22567 0.95664 0.97703 0.98171 1.21167 0.98943 0.95595 0.97700 1.20416 0.89109 0.91862 0.87284 1.42237 1.42865 1.29781 1.19716 1.19075 1.09964 1.00419 1.05843 0.91491 1.24654 1.00039 0.97775 0.98484 1.69650 1.43083 1.28489 1.17047 0.86310 0.82266 0.81069 0.77322 1.21945 1.22006 1.20951 1.22552 0.95763 0.98894 0.98802 1.22035 0.97318 0.96234 0.99917 1.21945 0.97034 0.95339 1.00612 1.22823 0.96434 1.00319 0.97812 0.89134 0.89952 0.88874 0.91777 0.92946 0.78256 0.93781 0.92101 0.91917 0.92141 0.93252 0.91978 0.93595 0.91231 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.67 14.32 29.02 0.42 -3.25 16 2 C -0.12 -2.28 8.72 -36.03 -0.31 -2.60 16 3 C -0.09 -1.75 4.60 -27.88 -0.13 -1.88 16 4 C 0.21 4.02 0.52 -129.84 -0.07 3.95 16 5 N -0.71 -17.16 4.75 -45.40 -0.22 -17.37 16 6 C -0.22 -5.99 8.62 -15.06 -0.13 -6.12 16 7 H 0.07 1.79 7.15 -52.49 -0.38 1.41 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 10 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C -0.12 -2.07 5.17 -25.07 -0.13 -2.20 16 15 C -0.12 -1.91 6.78 -25.61 -0.17 -2.08 16 16 C -0.11 -1.90 6.78 -25.61 -0.17 -2.07 16 17 C -0.13 -2.46 5.84 -25.08 -0.15 -2.61 16 18 H 0.09 1.75 7.84 -52.49 -0.41 1.34 16 19 H 0.08 1.42 8.06 -52.48 -0.42 0.99 16 20 H 0.09 1.62 7.85 -52.49 -0.41 1.20 16 21 H 0.06 1.29 7.27 -51.93 -0.38 0.91 16 22 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 23 H 0.38 10.17 7.70 -40.82 -0.31 9.85 16 24 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 26 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.43 7.08 -51.93 -0.37 1.06 16 32 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 261.66 15.07 3.94 3.94 Total: -1.00 -28.88 261.66 -6.70 -35.58 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.18 Total: 7.10 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.94 Total: -19.35 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.51 Total: -44.85 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.88 -6.70 -35.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.792 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds