Wall clock time and date at job start Sun Mar 29 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 119.99936 * 2 1 4 4 C 1.52999 * 109.47219 * 122.70867 * 3 2 1 5 5 N 1.46498 * 110.81687 * 301.22008 * 4 3 2 6 6 C 1.36939 * 119.99858 * 298.29976 * 5 4 3 7 7 H 1.08000 * 120.00315 * 355.89389 * 6 5 4 8 8 C 1.38816 * 119.99832 * 175.89910 * 6 5 4 9 9 N 1.31613 * 120.00328 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99607 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46990 * 90.00210 * 10 8 6 12 12 H 1.48502 * 109.47019 * 209.99689 * 10 8 6 13 13 H 1.48498 * 109.47407 * 329.99588 * 10 8 6 14 14 C 1.54890 * 110.75407 * 64.55362 * 4 3 2 15 15 C 1.54266 * 104.19712 * 156.25733 * 14 4 3 16 16 C 1.53874 * 106.59920 * 336.38938 * 15 14 4 17 17 C 1.54273 * 106.59854 * 0.02562 * 16 15 14 18 18 H 1.07999 * 120.00254 * 359.97438 * 1 2 3 19 19 H 1.08006 * 119.99571 * 179.97438 * 1 2 3 20 20 H 1.07999 * 120.00254 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.47168 * 2.71196 * 3 2 1 22 22 H 1.09001 * 109.47415 * 242.70895 * 3 2 1 23 23 H 0.96998 * 120.00014 * 118.30412 * 5 4 3 24 24 H 0.96995 * 120.00525 * 179.97438 * 9 8 6 25 25 H 1.08999 * 110.48880 * 37.57963 * 14 4 3 26 26 H 1.09004 * 110.48832 * 274.93274 * 14 4 3 27 27 H 1.09006 * 110.03355 * 95.67022 * 15 14 4 28 28 H 1.08992 * 110.03598 * 217.10521 * 15 14 4 29 29 H 1.09007 * 110.02977 * 119.27969 * 16 15 14 30 30 H 1.08994 * 110.03338 * 240.71049 * 16 15 14 31 31 H 1.08998 * 110.48837 * 142.28484 * 17 16 15 32 32 H 1.09002 * 110.47853 * 264.93028 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9935 1.3571 1.2137 5 7 2.2327 1.2240 2.4586 6 6 1.2878 2.1591 2.7869 7 1 1.1494 3.0293 2.1624 8 6 0.5078 1.9887 3.9225 9 7 0.6761 0.9281 4.6834 10 14 -0.7806 3.2648 4.3706 11 1 -2.0731 2.9086 3.7320 12 1 -0.9505 3.3000 5.8455 13 1 -0.3427 4.6001 3.8908 14 6 4.0839 0.2613 1.1170 15 6 5.2350 0.7944 1.9948 16 6 5.0689 2.3229 2.0567 17 6 3.8223 2.6653 1.2148 18 1 -0.5400 0.9353 0.0004 19 1 -0.5400 -0.9354 -0.0004 20 1 1.8500 -0.9353 -0.0004 21 1 1.3561 2.1330 0.0486 22 1 2.6532 1.3842 -0.9133 23 1 2.3984 0.4734 3.0504 24 1 0.1314 0.8091 5.4771 25 1 4.4146 0.1422 0.0852 26 1 3.7106 -0.6843 1.5104 27 1 5.1675 0.3707 2.9969 28 1 6.1952 0.5411 1.5457 29 1 4.9208 2.6409 3.0888 30 1 5.9486 2.8113 1.6377 31 1 3.2585 3.4741 1.6795 32 1 4.1105 2.9344 0.1987 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595780284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:57 Heat of formation + Delta-G solvation = -3.408914 kcal Electronic energy + Delta-G solvation = -12859.736416 eV Core-core repulsion = 10819.550677 eV Total energy + Delta-G solvation = -2040.185739 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85669 -35.42401 -34.88224 -32.12747 -29.58828 -29.46630 -26.05624 -25.09019 -21.54350 -20.49006 -19.70586 -18.81814 -17.04627 -16.19048 -15.94170 -15.68221 -15.15057 -14.50220 -14.14734 -13.80040 -13.20761 -13.07462 -12.80932 -12.40577 -12.31970 -12.24940 -11.84653 -11.73697 -11.58596 -11.52892 -11.11994 -11.04181 -10.79002 -9.94648 -8.83179 -7.84382 -5.07909 1.46074 1.46700 1.53940 1.67795 2.60966 3.48191 3.82986 3.92299 4.00274 4.25915 4.33420 4.51758 4.68332 4.74461 4.81383 4.92121 4.97076 5.09306 5.11575 5.19474 5.20024 5.32557 5.37400 5.50373 5.54124 5.66368 5.75701 5.96560 6.17773 6.39874 7.45001 8.26131 8.47589 9.39860 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.014457 C = 0.011683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.911244 B = 1936.337812 C = 2395.975413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 C -0.091 4.091 4 C 0.190 3.810 5 N -0.713 5.713 6 C -0.203 4.203 7 H 0.068 0.932 8 C -0.078 4.078 9 N -0.971 5.971 10 Si 0.954 3.046 11 H -0.293 1.293 12 H -0.301 1.301 13 H -0.273 1.273 14 C -0.116 4.116 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.132 4.132 18 H 0.078 0.922 19 H 0.095 0.905 20 H 0.109 0.891 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.370 0.630 24 H 0.245 0.755 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -0.017 -9.812 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.144 4.144 3 C -0.130 4.130 4 C 0.100 3.900 5 N -0.352 5.352 6 C -0.335 4.335 7 H 0.086 0.914 8 C -0.269 4.269 9 N -0.623 5.623 10 Si 0.785 3.215 11 H -0.221 1.221 12 H -0.228 1.228 13 H -0.198 1.198 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.171 4.171 18 H 0.096 0.904 19 H 0.113 0.887 20 H 0.127 0.873 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.201 0.799 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.075 0.148 -9.827 12.110 hybrid contribution -1.143 0.377 1.108 1.636 sum 5.932 0.525 -8.719 10.559 Atomic orbital electron populations 1.23649 0.96584 1.00754 1.03709 1.22772 0.95694 0.98434 0.97454 1.21132 0.98605 0.94742 0.98551 1.20787 0.89716 0.93927 0.85535 1.42392 1.42874 1.28629 1.21304 1.19323 1.09120 1.00298 1.04784 0.91440 1.25298 1.02587 0.99731 0.99299 1.69793 1.44462 1.30447 1.17612 0.85408 0.80092 0.79621 0.76385 1.22079 1.22785 1.19830 1.22542 0.94759 0.97269 1.00777 1.22028 0.98761 0.95270 0.99168 1.21939 0.97639 0.96284 0.98941 1.22786 0.96382 0.98406 0.99524 0.90374 0.88659 0.87307 0.93980 0.89510 0.79865 0.94628 0.88875 0.92887 0.94027 0.89920 0.94769 0.90561 0.94206 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.73 14.32 67.79 0.97 -6.76 16 2 C -0.13 -4.43 8.72 25.65 0.22 -4.21 16 3 C -0.09 -3.16 4.60 29.85 0.14 -3.02 16 4 C 0.19 7.09 0.52 4.89 0.00 7.09 16 5 N -0.71 -34.61 4.75 -297.56 -1.41 -36.02 16 6 C -0.20 -11.01 8.62 84.03 0.72 -10.28 16 7 H 0.07 3.61 7.15 -2.91 -0.02 3.59 16 8 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 9 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 10 Si 0.95 47.19 29.55 68.60 2.03 49.21 16 11 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 13 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 14 C -0.12 -3.56 5.17 31.67 0.16 -3.39 16 15 C -0.11 -3.39 6.78 31.32 0.21 -3.18 16 16 C -0.11 -3.49 6.78 31.32 0.21 -3.28 16 17 C -0.13 -4.53 5.84 31.66 0.18 -4.35 16 18 H 0.08 3.03 7.84 -2.91 -0.02 3.00 16 19 H 0.10 3.19 8.06 -2.91 -0.02 3.17 16 20 H 0.11 3.49 7.85 -2.91 -0.02 3.47 16 21 H 0.04 1.63 7.27 -2.39 -0.02 1.61 16 22 H 0.09 2.43 8.13 -2.39 -0.02 2.41 16 23 H 0.37 19.83 7.70 -92.71 -0.71 19.12 16 24 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.09 2.29 8.04 -2.39 -0.02 2.27 16 26 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 27 H 0.04 1.37 8.14 -2.38 -0.02 1.36 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.59 7.08 -2.39 -0.02 1.58 16 32 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 Total: -1.00 -62.01 261.66 4.55 -57.46 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.36 Total: 24.42 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.30 Total: -35.40 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -1.13 Total: -95.69 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -62.01 4.55 -57.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.046 kcal (2) G-P(sol) polarization free energy of solvation -62.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds