Wall clock time and date at job start Sun Mar 29 2020 21:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 115.56295 * 2 1 4 4 C 1.53075 * 117.49468 * 145.71223 * 2 1 3 5 5 C 1.52996 * 59.98598 * 107.48498 * 4 2 1 6 6 H 1.09002 * 117.50078 * 252.49981 * 5 4 2 7 7 C 1.53000 * 117.49927 * 107.49931 * 5 4 2 8 8 N 1.46906 * 109.47072 * 116.25569 * 7 5 4 9 9 C 1.47475 * 110.99695 * 265.97442 * 8 7 5 10 10 C 1.53521 * 87.93048 * 221.29471 * 9 8 7 11 11 C 1.50699 * 114.17169 * 139.67081 * 10 9 8 12 12 H 1.08001 * 120.00186 * 266.16629 * 11 10 9 13 13 C 1.37877 * 119.99796 * 86.15787 * 11 10 9 14 14 N 1.31510 * 120.00482 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99689 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46981 * 60.00623 * 15 13 11 17 17 H 1.48502 * 109.46976 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47181 * 300.00306 * 15 13 11 19 19 C 1.47472 * 111.00187 * 169.99961 * 8 7 5 20 20 H 1.08996 * 109.46824 * 205.68748 * 1 2 3 21 21 H 1.08995 * 109.46693 * 325.68823 * 1 2 3 22 22 H 1.08997 * 109.46865 * 85.68689 * 1 2 3 23 23 H 1.08999 * 117.49235 * 359.97438 * 4 2 1 24 24 H 1.08999 * 117.53213 * 214.95358 * 4 2 1 25 25 H 1.08993 * 109.47007 * 356.25619 * 7 5 4 26 26 H 1.08996 * 109.47340 * 236.25424 * 7 5 4 27 27 H 1.09003 * 113.47854 * 336.05764 * 9 8 7 28 28 H 1.08998 * 113.48126 * 106.52852 * 9 8 7 29 29 H 1.08998 * 114.16825 * 272.37696 * 10 9 8 30 30 H 0.96996 * 120.00224 * 179.97438 * 14 13 11 31 31 H 1.08998 * 113.48140 * 253.47102 * 19 8 7 32 32 H 1.09007 * 113.47537 * 23.93571 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2368 -1.1219 0.7649 5 6 2.2365 -1.1210 -0.7650 6 1 1.6113 -1.8583 -1.2687 7 6 3.5490 -0.7759 -1.4715 8 7 4.0109 -1.9384 -2.2418 9 6 4.9588 -2.7502 -1.4561 10 6 5.7972 -2.9060 -2.7327 11 6 7.2847 -2.8149 -2.5089 12 1 7.7915 -1.8684 -2.6262 13 6 7.9987 -3.9399 -2.1544 14 7 7.3818 -5.0925 -2.0119 15 14 9.8427 -3.8270 -1.8777 16 1 10.1207 -2.8653 -0.7809 17 1 10.3707 -5.1652 -1.5090 18 1 10.5026 -3.3612 -3.1238 19 6 5.1374 -1.5757 -3.1217 20 1 -0.3633 -0.9261 0.4454 21 1 -0.3632 0.8488 0.5793 22 1 -0.3633 0.0773 -1.0247 23 1 1.6114 -1.8592 1.2682 24 1 3.1721 -0.8770 1.2682 25 1 4.3017 -0.5093 -0.7296 26 1 3.3887 0.0659 -2.1451 27 1 5.4643 -2.1886 -0.6705 28 1 4.5345 -3.6882 -1.0981 29 1 5.5047 -3.7491 -3.3585 30 1 7.8841 -5.8840 -1.7629 31 1 4.8644 -1.5182 -4.1754 32 1 5.6905 -0.7005 -2.7806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:34 Heat of formation + Delta-G solvation = 47.013861 kcal Electronic energy + Delta-G solvation = -12122.520228 eV Core-core repulsion = 10084.520985 eV Total energy + Delta-G solvation = -2037.999243 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.07645 -37.28262 -32.66185 -30.16106 -27.99556 -25.61247 -24.68875 -22.64526 -20.70798 -19.97829 -18.52467 -16.59885 -15.21320 -14.88035 -14.45985 -14.03710 -13.77129 -13.27454 -13.01777 -12.39340 -11.87360 -11.79182 -11.38159 -11.29482 -11.03422 -10.84530 -10.68783 -10.38624 -9.98365 -9.58742 -9.46113 -9.09913 -8.88526 -8.41232 -7.94740 -6.03439 -4.07970 3.31040 3.36097 3.38220 3.93624 4.41147 4.66797 5.01868 5.08978 5.26010 5.30055 5.41106 5.69065 5.80037 5.82543 5.92956 5.95662 6.02159 6.06506 6.22696 6.35595 6.41066 6.52818 6.60835 6.71485 6.82471 7.19390 7.25375 7.74502 7.94152 8.14663 8.40142 8.94852 9.56728 11.06214 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.070953 B = 0.007049 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.535159 B = 3971.259610 C = 4053.863381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.163 4.163 3 H 0.098 0.902 4 C -0.178 4.178 5 C -0.127 4.127 6 H 0.108 0.892 7 C 0.050 3.950 8 N -0.484 5.484 9 C 0.008 3.992 10 C 0.040 3.960 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.006 4.006 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 7.728 3.452 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.181 4.181 3 H 0.117 0.883 4 C -0.215 4.215 5 C -0.146 4.146 6 H 0.126 0.874 7 C -0.079 4.079 8 N -0.206 5.206 9 C -0.121 4.121 10 C 0.021 3.979 11 C -0.555 4.555 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.135 4.135 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.308 7.256 3.238 12.238 hybrid contribution 1.676 0.486 0.733 1.893 sum -7.632 7.742 3.972 11.574 Atomic orbital electron populations 1.21323 0.93170 1.01508 1.01591 1.22386 0.94941 0.94633 1.06181 0.88349 1.23178 1.02223 1.01010 0.95104 1.22357 0.98671 1.00563 0.92980 0.87357 1.22194 0.94356 0.94879 0.96466 1.68787 1.25379 1.13240 1.13202 1.24066 0.92595 0.96730 0.98676 1.20108 0.93809 0.91768 0.92207 1.21005 0.92208 0.94878 1.47438 0.92537 1.25014 0.98280 0.95302 0.94977 1.69957 1.35946 0.99487 1.47004 0.86680 0.85576 0.77161 0.78709 1.20275 1.21221 1.20143 1.23989 0.91740 1.00731 0.97012 0.92704 0.92608 0.92351 0.89180 0.89169 0.94208 0.91839 0.93048 0.91944 0.91826 0.92815 0.92070 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.19 37.16 0.38 -0.88 16 2 C -0.16 -2.06 6.13 -90.58 -0.56 -2.62 16 3 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.18 -2.47 9.83 -26.69 -0.26 -2.74 16 5 C -0.13 -1.97 5.73 -90.62 -0.52 -2.48 16 6 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 7 C 0.05 0.88 5.10 -3.82 -0.02 0.86 16 8 N -0.48 -10.15 6.33 -244.65 -1.55 -11.70 16 9 C 0.01 0.20 7.28 -7.55 -0.05 0.14 16 10 C 0.04 1.03 3.77 -91.24 -0.34 0.68 16 11 C -0.52 -14.27 8.82 -34.44 -0.30 -14.57 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.89 -25.85 13.26 55.43 0.74 -25.11 16 15 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 20 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.09 1.16 8.05 -51.93 -0.42 0.75 16 24 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 25 H 0.04 0.72 7.03 -51.93 -0.37 0.35 16 26 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 27 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 28 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.10 7.87 -51.92 -0.41 0.70 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -28.20 267.42 -8.96 -37.17 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.32 Total: -0.53 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -1.83 Total: -20.02 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.81 Total: -36.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.20 -8.96 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.179 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds