Wall clock time and date at job start Sun Mar 29 2020 22:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00158 * 2 1 4 4 H 1.48502 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47080 * 299.99677 * 3 2 1 6 6 H 1.48505 * 109.47041 * 59.99914 * 3 2 1 7 7 C 1.37880 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99932 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46873 * 180.02562 * 9 7 2 11 11 C 1.48511 * 110.99616 * 189.99934 * 10 9 7 12 12 C 1.54269 * 104.73768 * 200.66697 * 11 10 9 13 13 H 1.09002 * 113.17070 * 260.63650 * 12 11 10 14 14 C 1.54394 * 108.76767 * 134.58958 * 12 11 10 15 15 O 1.44383 * 104.91170 * 224.67519 * 14 12 11 16 16 C 1.44379 * 105.25787 * 40.76726 * 15 14 12 17 17 C 1.54397 * 104.91728 * 319.23304 * 16 15 14 18 18 H 1.09001 * 112.68457 * 261.66150 * 17 16 15 19 19 C 1.48505 * 111.00175 * 74.60682 * 10 9 7 20 20 H 0.96999 * 119.99666 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47211 * 59.99772 * 9 7 2 22 22 H 1.08999 * 109.47133 * 299.99847 * 9 7 2 23 23 H 1.09000 * 110.38392 * 81.84980 * 11 10 9 24 24 H 1.08994 * 110.38126 * 319.48617 * 11 10 9 25 25 H 1.09004 * 110.34930 * 105.82323 * 14 12 11 26 26 H 1.08990 * 110.35149 * 343.53604 * 14 12 11 27 27 H 1.09003 * 110.35424 * 200.37679 * 16 15 14 28 28 H 1.08992 * 110.44363 * 78.13955 * 16 15 14 29 29 H 1.09006 * 110.38243 * 40.51219 * 19 10 9 30 30 H 1.09000 * 110.38242 * 278.14397 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0018 11 6 1.5136 -4.9077 -0.2389 12 6 2.4821 -5.9787 0.3041 13 1 3.0739 -6.4569 -0.4764 14 6 1.6793 -6.9922 1.1479 15 8 2.4730 -7.1972 2.3365 16 6 2.9683 -5.8887 2.6930 17 6 3.3553 -5.2310 1.3508 18 1 4.4223 -5.3025 1.1399 19 6 2.8300 -3.7806 1.3390 20 1 -0.4849 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 1.3443 -5.0547 -1.3056 24 1 0.5691 -4.9394 0.3041 25 1 1.5621 -7.9296 0.6041 26 1 0.7048 -6.5801 1.4093 27 1 3.8426 -5.9770 3.3379 28 1 2.1897 -5.3089 3.1886 29 1 2.0878 -3.6391 2.1247 30 1 3.6537 -3.0775 1.4626 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601972526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:07 Heat of formation + Delta-G solvation = -40.655060 kcal Electronic energy + Delta-G solvation = -12796.806861 eV Core-core repulsion = 10591.861435 eV Total energy + Delta-G solvation = -2204.945426 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.01687 -36.44600 -32.99802 -31.00278 -30.38390 -26.78444 -25.73692 -23.47866 -21.92587 -20.24807 -19.47955 -16.70120 -16.24687 -15.35803 -15.29618 -14.60995 -14.32083 -13.48857 -13.21976 -12.78813 -12.24644 -11.92410 -11.76764 -11.12684 -10.96686 -10.73674 -10.60266 -10.53495 -10.42991 -10.28524 -9.80023 -9.66781 -9.22197 -8.45710 -7.44936 -6.05210 -4.06649 3.29595 3.36923 3.42164 4.10272 4.40698 4.65730 4.80276 5.00244 5.25197 5.30312 5.38364 5.42697 5.58941 5.62596 5.83946 5.89123 5.97761 6.07958 6.24133 6.44787 6.47558 6.57064 6.88478 7.08638 7.23561 7.74334 7.94661 8.12252 8.46662 9.01432 9.57882 11.05859 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069817 B = 0.008361 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.951316 B = 3347.950753 C = 3506.153749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.181 3.819 10 N -0.507 5.507 11 C 0.036 3.964 12 C -0.121 4.121 13 H 0.093 0.907 14 C 0.048 3.952 15 O -0.382 6.382 16 C 0.048 3.952 17 C -0.125 4.125 18 H 0.093 0.907 19 C 0.052 3.948 20 H 0.261 0.739 21 H 0.030 0.970 22 H -0.006 1.006 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -10.400 2.734 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.055 3.945 10 N -0.231 5.231 11 C -0.093 4.093 12 C -0.141 4.141 13 H 0.112 0.888 14 C -0.029 4.029 15 O -0.301 6.301 16 C -0.029 4.029 17 C -0.144 4.144 18 H 0.112 0.888 19 C -0.077 4.077 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.012 0.988 23 H 0.092 0.908 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.229 -10.332 2.427 11.425 hybrid contribution -0.374 1.078 0.467 1.233 sum 3.855 -9.254 2.894 10.435 Atomic orbital electron populations 1.69969 1.06080 1.26706 1.51150 1.25010 0.94892 0.99404 0.95436 0.86426 0.80085 0.83314 0.77520 1.19634 1.20971 1.21097 1.21165 0.93576 0.89805 1.49859 0.91836 1.19902 0.90265 0.87995 0.96293 1.65496 1.29923 1.02184 1.25505 1.23133 0.94860 0.90602 1.00699 1.23285 0.96841 0.95900 0.98041 0.88830 1.23620 0.94206 0.99360 0.85677 1.89044 1.68225 1.28368 1.44487 1.23629 0.98830 0.83906 0.96517 1.23355 1.00496 0.96472 0.94071 0.88850 1.23007 0.99108 0.93574 0.91984 0.92959 0.95157 0.98797 0.90813 0.94376 0.89411 0.92147 0.89366 0.92039 0.94179 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.34 8.97 -34.44 -0.31 -14.64 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.18 4.76 4.59 -4.97 -0.02 4.73 16 10 N -0.51 -11.06 5.32 -231.65 -1.23 -12.30 16 11 C 0.04 0.64 6.00 -2.27 -0.01 0.62 16 12 C -0.12 -1.82 4.21 -87.91 -0.37 -2.19 16 13 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 14 C 0.05 0.66 7.17 37.89 0.27 0.93 16 15 O -0.38 -5.81 11.65 -35.23 -0.41 -6.22 16 16 C 0.05 0.68 7.17 37.89 0.27 0.95 16 17 C -0.12 -1.92 4.21 -87.91 -0.37 -2.29 16 18 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 19 C 0.05 0.99 5.66 -2.28 -0.01 0.97 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 22 H -0.01 -0.16 7.77 -51.93 -0.40 -0.56 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.04 0.69 6.99 -51.93 -0.36 0.33 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.84 7.14 -51.93 -0.37 0.46 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.88 7.13 -51.93 -0.37 0.51 16 29 H 0.04 0.79 6.74 -51.93 -0.35 0.44 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 243.39 15.07 3.67 3.67 Total: -1.00 -30.31 243.39 -7.27 -37.58 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -4.36 Total: -3.87 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.65 Total: -9.47 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.50 Total: -38.37 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.41 Total: -6.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.31 -7.27 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601972526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.070 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds