Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29953 * 125.30209 * 2 1 4 4 O 1.41882 * 107.41388 * 179.97438 * 3 2 1 5 5 N 1.41884 * 106.38605 * 359.77963 * 4 3 2 6 6 C 1.29952 * 107.41518 * 0.37133 * 5 4 3 7 7 C 1.50698 * 125.30675 * 179.89422 * 6 5 4 8 8 N 1.46502 * 109.47321 * 84.73053 * 7 6 5 9 9 C 1.46502 * 120.00093 * 272.56028 * 8 7 6 10 10 C 1.36931 * 119.99692 * 92.55511 * 8 7 6 11 11 H 1.08002 * 120.00631 * 338.66911 * 10 8 7 12 12 C 1.38815 * 119.99768 * 158.38991 * 10 8 7 13 13 N 1.31617 * 120.00043 * 349.01605 * 12 10 8 14 14 Si 1.86799 * 120.00176 * 169.01448 * 12 10 8 15 15 H 1.48509 * 109.46743 * 60.00153 * 14 12 10 16 16 H 1.48494 * 109.47351 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47318 * 300.00289 * 14 12 10 18 18 H 1.08998 * 109.47298 * 273.47727 * 1 2 3 19 19 H 1.09003 * 109.47113 * 33.48108 * 1 2 3 20 20 H 1.09004 * 109.46692 * 153.48155 * 1 2 3 21 21 H 1.09002 * 109.46707 * 324.73398 * 7 6 5 22 22 H 1.08997 * 109.47254 * 204.73621 * 7 6 5 23 23 H 1.09006 * 109.46925 * 264.89739 * 9 8 7 24 24 H 1.08999 * 109.47210 * 24.89409 * 9 8 7 25 25 H 1.08997 * 109.46819 * 144.89597 * 9 8 7 26 26 H 0.96997 * 120.00270 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6248 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0006 7 6 1.8209 -2.5714 0.0013 8 7 1.7713 -3.0710 1.3776 9 6 2.9569 -3.6903 1.9753 10 6 0.6168 -2.9590 2.1053 11 1 -0.1271 -2.2266 1.8287 12 6 0.4000 -3.7909 3.1953 13 7 1.1898 -4.8232 3.4026 14 14 -1.0124 -3.4452 4.3678 15 1 -2.2962 -3.4885 3.6225 16 1 -1.0284 -4.4723 5.4401 17 1 -0.8361 -2.1004 4.9724 18 1 -0.3634 0.0623 1.0257 19 1 -0.3633 0.8572 -0.5669 20 1 -0.3633 -0.9196 -0.4589 21 1 2.4948 -3.1940 -0.5872 22 1 0.8221 -2.6052 -0.4338 23 1 2.8997 -4.7725 1.8580 24 1 3.8518 -3.3177 1.4769 25 1 3.0012 -3.4415 3.0355 26 1 1.0381 -5.4047 4.1640 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691715726.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = 109.991003 kcal Electronic energy + Delta-G solvation = -12534.909318 eV Core-core repulsion = 10232.956052 eV Total energy + Delta-G solvation = -2301.953266 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84222 -35.97521 -33.70943 -32.60755 -30.89245 -28.40709 -26.95086 -25.89290 -22.37939 -21.25396 -19.88407 -16.87692 -16.30542 -15.69573 -14.88278 -14.09085 -13.97404 -13.58992 -13.27608 -13.04732 -12.65175 -11.98041 -11.62302 -11.22204 -11.06382 -10.99162 -10.85347 -10.51651 -10.32473 -10.16982 -10.12658 -9.88051 -8.72560 -7.06102 -5.89476 -3.39396 1.08017 2.55744 3.24476 3.29805 3.35292 3.35871 3.74800 4.34982 4.49577 5.20501 5.33525 5.36007 5.44893 5.62119 5.84589 5.92361 6.11890 6.22833 6.35702 6.69986 7.29188 7.53062 7.57382 7.67272 8.17782 9.02325 9.63119 10.09869 11.14943 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.042780 B = 0.011906 C = 0.010238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.356069 B = 2351.173564 C = 2734.255756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 N -0.302 5.302 4 O -0.005 6.005 5 N -0.282 5.282 6 C 0.071 3.929 7 C 0.204 3.796 8 N -0.582 5.582 9 C 0.158 3.842 10 C -0.274 4.274 11 H 0.074 0.926 12 C 0.010 3.990 13 N -0.901 5.901 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.283 1.283 18 H 0.097 0.903 19 H 0.080 0.920 20 H 0.095 0.905 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.038 0.962 24 H 0.003 0.997 25 H 0.046 0.954 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 4.658 -5.947 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 N -0.049 5.049 4 O -0.140 6.140 5 N -0.031 5.031 6 C -0.117 4.117 7 C 0.073 3.927 8 N -0.303 5.303 9 C 0.014 3.986 10 C -0.402 4.402 11 H 0.092 0.908 12 C -0.189 4.189 13 N -0.545 5.545 14 Si 0.737 3.263 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.209 1.209 18 H 0.115 0.885 19 H 0.099 0.901 20 H 0.114 0.886 21 H 0.086 0.914 22 H 0.104 0.896 23 H 0.057 0.943 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.268 5.344 -5.759 7.958 hybrid contribution -1.208 -0.190 0.885 1.509 sum -2.476 5.154 -4.874 7.513 Atomic orbital electron populations 1.20545 0.84757 1.04420 1.04888 1.24576 1.00122 0.89331 0.95103 1.79745 0.89621 1.20240 1.15310 1.93295 1.20079 1.15319 1.85281 1.79887 1.18490 0.89927 1.14806 1.26659 0.89163 1.02398 0.93435 1.19578 1.00013 0.83784 0.89351 1.43951 1.10820 1.67211 1.08317 1.20944 0.84304 0.96638 0.96762 1.19189 0.96511 1.14880 1.09660 0.90823 1.25043 0.98437 0.95517 0.99952 1.70070 1.39403 1.15077 1.29929 0.86289 0.81764 0.77551 0.80656 1.20553 1.21415 1.20934 0.88494 0.90143 0.88643 0.91421 0.89601 0.94337 0.97797 0.93508 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.19 36.00 0.37 -0.78 15 2 C 0.09 1.58 7.19 -82.38 -0.59 0.99 15 3 N -0.30 -5.74 12.98 33.74 0.44 -5.30 15 4 O 0.00 -0.10 13.71 12.02 0.16 0.07 15 5 N -0.28 -5.84 12.98 33.74 0.44 -5.40 15 6 C 0.07 1.35 6.77 -82.38 -0.56 0.79 15 7 C 0.20 3.86 6.03 -5.19 -0.03 3.83 15 8 N -0.58 -13.76 2.91 -182.50 -0.53 -14.29 15 9 C 0.16 3.84 8.97 59.85 0.54 4.37 15 10 C -0.27 -6.88 9.67 -15.06 -0.15 -7.03 15 11 H 0.07 1.71 7.78 -52.49 -0.41 1.30 15 12 C 0.01 0.26 5.15 -17.43 -0.09 0.17 15 13 N -0.90 -25.05 10.52 55.49 0.58 -24.47 15 14 Si 0.91 20.60 29.57 -169.99 -5.03 15.57 15 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 16 H -0.29 -6.67 7.11 56.52 0.40 -6.26 15 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 18 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.09 1.09 6.95 -51.93 -0.36 0.73 15 21 H 0.07 1.20 8.09 -51.93 -0.42 0.78 15 22 H 0.09 1.41 6.81 -51.93 -0.35 1.06 15 23 H 0.04 0.98 7.39 -51.93 -0.38 0.60 15 24 H 0.00 0.08 8.03 -51.93 -0.42 -0.34 15 25 H 0.05 1.24 7.19 -51.93 -0.37 0.86 15 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 234.79 15.07 3.54 3.54 Total: -1.00 -29.46 234.79 -3.60 -33.06 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -2.70 Total: -5.13 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.51 Total: 2.35 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.93 Total: -49.46 kcal Atomic # 8 Polarization: -0.10 SS G_CDS: 0.16 Total: 0.07 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.46 -3.60 -33.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691715726.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.051 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds