Wall clock time and date at job start Sun Mar 29 2020 21:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47212 * 2 1 4 4 C 1.52995 * 109.47532 * 239.99586 * 2 1 3 5 5 C 1.50704 * 109.47207 * 175.00022 * 4 2 1 6 6 H 1.07996 * 120.00234 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99810 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00078 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47299 * 89.99885 * 9 7 5 11 11 H 1.48507 * 109.47139 * 209.99825 * 9 7 5 12 12 H 1.48498 * 109.47369 * 329.99432 * 9 7 5 13 13 N 1.46905 * 109.47276 * 119.99535 * 2 1 3 14 14 C 1.48556 * 110.99651 * 48.05576 * 13 2 1 15 15 C 1.54382 * 104.59512 * 200.96411 * 14 13 2 16 16 H 1.09002 * 118.15632 * 244.14894 * 15 14 13 17 17 C 1.57007 * 118.21555 * 86.26388 * 15 14 13 18 18 C 1.53000 * 59.66742 * 268.82634 * 17 15 14 19 19 H 1.08995 * 119.52614 * 247.60195 * 18 17 15 20 20 C 1.48561 * 110.99814 * 292.64267 * 13 2 1 21 21 H 1.09003 * 109.46972 * 172.31865 * 1 2 3 22 22 H 1.09007 * 109.47152 * 52.32304 * 1 2 3 23 23 H 1.08997 * 109.47719 * 292.31672 * 1 2 3 24 24 H 1.08996 * 109.47324 * 295.00243 * 4 2 1 25 25 H 1.08998 * 109.47179 * 55.00238 * 4 2 1 26 26 H 0.96997 * 120.00130 * 180.02562 * 8 7 5 27 27 H 1.08999 * 110.41672 * 319.74281 * 14 13 2 28 28 H 1.09002 * 110.41235 * 82.18458 * 14 13 2 29 29 H 1.09004 * 116.97387 * 161.28368 * 17 15 14 30 30 H 1.09007 * 118.40573 * 15.72247 * 17 15 14 31 31 H 1.09002 * 110.40899 * 277.81611 * 20 13 2 32 32 H 1.08995 * 110.41619 * 40.13792 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0922 -1.0615 -2.4363 10 1 6.7000 -2.2147 -1.7251 11 1 6.5298 -1.0686 -3.8554 12 1 6.5268 0.2032 -1.7907 13 7 2.0197 -0.6924 1.1995 14 6 1.3231 -1.9912 1.3861 15 6 1.5151 -2.3244 2.8812 16 1 2.0949 -3.2102 3.1405 17 6 0.4847 -1.7381 3.9106 18 6 1.7589 -0.9642 3.5669 19 1 2.5298 -0.8341 4.3264 20 6 1.6937 0.0763 2.4283 21 1 -0.3633 -1.0185 -0.1374 22 1 -0.3634 0.6282 -0.8134 23 1 -0.3634 0.3902 0.9506 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 4.0609 -2.2439 -4.0351 27 1 0.2632 -1.8914 1.1519 28 1 1.7800 -2.7605 0.7635 29 1 0.4360 -2.2168 4.8887 30 1 -0.4592 -1.3449 3.5328 31 1 2.4297 0.8638 2.5904 32 1 0.6927 0.5016 2.3564 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:16 Heat of formation + Delta-G solvation = 36.399191 kcal Electronic energy + Delta-G solvation = -12654.743691 eV Core-core repulsion = 10616.284161 eV Total energy + Delta-G solvation = -2038.459530 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.54459 -35.36105 -32.50200 -29.91224 -27.99398 -27.28768 -24.26577 -22.69844 -20.76354 -19.84011 -18.54618 -16.14140 -15.94815 -15.17516 -14.39540 -13.58848 -13.38247 -13.20810 -12.78582 -12.00412 -11.75880 -11.55419 -11.44246 -11.15503 -10.84198 -10.77742 -10.60890 -10.36648 -10.01027 -9.76339 -9.53898 -9.15977 -8.96855 -8.23201 -7.53887 -5.85835 -3.83491 3.41904 3.47319 3.51835 3.78406 4.55959 4.59779 4.87217 4.99087 5.26710 5.42819 5.51579 5.56499 5.73367 5.81732 5.86374 5.93227 6.01968 6.03483 6.23530 6.36830 6.37486 6.51653 6.61170 6.72759 7.00212 7.49372 7.60282 7.84707 8.02114 8.15150 8.61330 9.22276 9.77976 11.26250 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.045800 B = 0.010063 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.200324 B = 2781.852423 C = 3024.327684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.070 0.930 4 C 0.033 3.967 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.479 5.479 14 C 0.058 3.942 15 C -0.162 4.162 16 H 0.114 0.886 17 C -0.161 4.161 18 C -0.161 4.161 19 H 0.108 0.892 20 C 0.051 3.949 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.017 0.983 25 H 0.018 0.982 26 H 0.257 0.743 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 1.241 11.249 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.035 4.035 3 H 0.088 0.912 4 C -0.004 4.004 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.202 5.202 14 C -0.069 4.069 15 C -0.181 4.181 16 H 0.131 0.869 17 C -0.199 4.199 18 C -0.180 4.180 19 H 0.126 0.874 20 C -0.076 4.076 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.229 1.106 10.975 12.208 hybrid contribution 0.228 0.098 -0.006 0.248 sum -5.001 1.204 10.970 12.116 Atomic orbital electron populations 1.22542 0.99756 1.01656 1.00502 1.22058 0.90189 0.98645 0.92566 0.91179 1.19127 0.96357 0.95273 0.89642 1.21180 0.91828 1.32947 1.06898 0.92193 1.25009 0.98064 0.95909 0.95977 1.69962 1.35193 1.37003 1.12385 0.86613 0.86388 0.78353 0.76707 1.20915 1.21619 1.20036 1.65795 1.52227 1.01626 1.00597 1.22674 0.97383 0.94118 0.92725 1.24124 1.03416 0.97602 0.92931 0.86850 1.23656 0.93605 1.03343 0.99268 1.23381 0.99745 0.94421 1.00403 0.87356 1.22716 0.99363 0.95795 0.89775 0.92481 0.92515 0.93914 0.96436 0.96357 0.93345 0.93464 0.89316 0.88644 0.89376 0.90434 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.16 37.15 0.30 -2.96 16 2 C 0.07 1.55 2.29 -67.72 -0.15 1.39 16 3 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 4 C 0.03 0.86 4.47 -27.88 -0.12 0.74 16 5 C -0.49 -14.07 8.84 -34.44 -0.30 -14.38 16 6 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.48 -9.56 5.06 -222.03 -1.12 -10.68 16 14 C 0.06 1.06 5.37 -2.18 -0.01 1.05 16 15 C -0.16 -2.45 7.29 -87.06 -0.63 -3.09 16 16 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 17 C -0.16 -2.02 10.30 -24.56 -0.25 -2.27 16 18 C -0.16 -2.31 6.98 -89.24 -0.62 -2.94 16 19 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 20 C 0.05 0.84 6.14 -2.18 -0.01 0.83 16 21 H 0.06 1.00 6.39 -51.93 -0.33 0.67 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.67 6.12 -51.93 -0.32 0.35 16 24 H 0.02 0.48 7.15 -51.93 -0.37 0.11 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.05 0.82 5.37 -51.93 -0.28 0.54 16 28 H 0.09 1.80 7.67 -51.93 -0.40 1.40 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.63 5.99 -51.93 -0.31 0.32 16 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -30.35 254.34 -8.42 -38.77 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.93 Total: -2.16 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.91 Total: -20.27 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.39 Total: -37.62 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.35 -8.42 -38.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.165 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds