Wall clock time and date at job start Sun Mar 29 2020 21:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47212 * 2 1 4 4 C 1.52995 * 109.47532 * 239.99586 * 2 1 3 5 5 C 1.50704 * 109.47207 * 175.00022 * 4 2 1 6 6 H 1.07996 * 120.00234 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99810 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00078 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47299 * 89.99885 * 9 7 5 11 11 H 1.48507 * 109.47139 * 209.99825 * 9 7 5 12 12 H 1.48498 * 109.47369 * 329.99432 * 9 7 5 13 13 N 1.46905 * 109.47276 * 119.99535 * 2 1 3 14 14 C 1.48556 * 110.99651 * 48.05576 * 13 2 1 15 15 C 1.54382 * 104.59512 * 200.96411 * 14 13 2 16 16 H 1.09002 * 118.15632 * 244.14894 * 15 14 13 17 17 C 1.57007 * 118.21555 * 86.26388 * 15 14 13 18 18 C 1.53000 * 59.66742 * 268.82634 * 17 15 14 19 19 H 1.08995 * 119.52614 * 247.60195 * 18 17 15 20 20 C 1.48561 * 110.99814 * 292.64267 * 13 2 1 21 21 H 1.09003 * 109.46972 * 172.31865 * 1 2 3 22 22 H 1.09007 * 109.47152 * 52.32304 * 1 2 3 23 23 H 1.08997 * 109.47719 * 292.31672 * 1 2 3 24 24 H 1.08996 * 109.47324 * 295.00243 * 4 2 1 25 25 H 1.08998 * 109.47179 * 55.00238 * 4 2 1 26 26 H 0.96997 * 120.00130 * 180.02562 * 8 7 5 27 27 H 1.08999 * 110.41672 * 319.74281 * 14 13 2 28 28 H 1.09002 * 110.41235 * 82.18458 * 14 13 2 29 29 H 1.09004 * 116.97387 * 161.28368 * 17 15 14 30 30 H 1.09007 * 118.40573 * 15.72247 * 17 15 14 31 31 H 1.09002 * 110.40899 * 277.81611 * 20 13 2 32 32 H 1.08995 * 110.41619 * 40.13792 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0922 -1.0615 -2.4363 10 1 6.7000 -2.2147 -1.7251 11 1 6.5298 -1.0686 -3.8554 12 1 6.5268 0.2032 -1.7907 13 7 2.0197 -0.6924 1.1995 14 6 1.3231 -1.9912 1.3861 15 6 1.5151 -2.3244 2.8812 16 1 2.0949 -3.2102 3.1405 17 6 0.4847 -1.7381 3.9106 18 6 1.7589 -0.9642 3.5669 19 1 2.5298 -0.8341 4.3264 20 6 1.6937 0.0763 2.4283 21 1 -0.3633 -1.0185 -0.1374 22 1 -0.3634 0.6282 -0.8134 23 1 -0.3634 0.3902 0.9506 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 4.0609 -2.2439 -4.0351 27 1 0.2632 -1.8914 1.1519 28 1 1.7800 -2.7605 0.7635 29 1 0.4360 -2.2168 4.8887 30 1 -0.4592 -1.3449 3.5328 31 1 2.4297 0.8638 2.5904 32 1 0.6927 0.5016 2.3564 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:16 Heat of formation + Delta-G solvation = 17.066239 kcal Electronic energy + Delta-G solvation = -12655.582031 eV Core-core repulsion = 10616.284161 eV Total energy + Delta-G solvation = -2039.297869 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88629 -36.89397 -34.61653 -31.53252 -29.35252 -29.15257 -25.82529 -24.55728 -22.05101 -21.06283 -20.14782 -18.37030 -17.22256 -16.65681 -16.42249 -15.10161 -14.83348 -14.75272 -14.04620 -13.88177 -13.61378 -13.18379 -12.86300 -12.76206 -12.57150 -12.38624 -12.17938 -12.09173 -11.73212 -11.14760 -11.10445 -10.94550 -10.69931 -10.49397 -9.01763 -8.11965 -6.17338 1.40109 1.41780 1.52591 2.45996 2.68666 3.15305 3.27888 3.65734 3.78768 4.12651 4.19009 4.23264 4.35169 4.38837 4.53547 4.66429 4.71937 4.87524 4.94705 5.01233 5.09308 5.17614 5.22310 5.28885 5.38367 5.44114 5.67010 5.86170 6.17267 6.29470 6.48910 6.96079 7.48445 9.00182 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.045800 B = 0.010063 C = 0.009256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.200324 B = 2781.852423 C = 3024.327684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 H 0.064 0.936 4 C 0.040 3.960 5 C -0.503 4.503 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.510 5.510 14 C 0.059 3.941 15 C -0.182 4.182 16 H 0.118 0.882 17 C -0.127 4.127 18 C -0.162 4.162 19 H 0.123 0.877 20 C 0.051 3.949 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.069 0.931 24 H -0.009 1.009 25 H -0.007 1.007 26 H 0.259 0.741 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 1.763 13.340 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 H 0.082 0.918 4 C 0.003 3.997 5 C -0.542 4.542 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.582 5.582 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.190 1.190 13 N -0.233 5.233 14 C -0.068 4.068 15 C -0.201 4.201 16 H 0.136 0.864 17 C -0.164 4.164 18 C -0.181 4.181 19 H 0.141 0.859 20 C -0.076 4.076 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.009 0.991 25 H 0.011 0.989 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.363 1.637 13.082 14.233 hybrid contribution 0.253 -0.071 -0.659 0.709 sum -5.110 1.566 12.423 13.524 Atomic orbital electron populations 1.22397 0.96939 1.01782 1.02204 1.21743 0.92431 0.97381 0.91190 0.91774 1.18968 0.95256 0.94052 0.91460 1.21492 0.93326 1.32645 1.06699 0.92636 1.25891 1.03160 0.95564 0.95643 1.70090 1.37165 1.37896 1.13040 0.85529 0.80309 0.78661 0.76992 1.20391 1.20909 1.19040 1.65648 1.53456 1.02765 1.01478 1.22554 0.97096 0.92514 0.94683 1.24051 1.06406 0.98407 0.91267 0.86393 1.23782 0.92671 1.00692 0.99216 1.23454 1.01814 0.92815 1.00026 0.85902 1.22747 1.00029 0.96049 0.88820 0.92860 0.92027 0.91186 0.99061 0.98878 0.93193 0.92762 0.93037 0.85668 0.88665 0.90435 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.96 8.16 71.98 0.59 -5.37 16 2 C 0.08 3.44 2.29 44.91 0.10 3.54 16 3 H 0.06 2.75 8.11 -2.39 -0.02 2.73 16 4 C 0.04 2.16 4.47 29.85 0.13 2.29 16 5 C -0.50 -29.63 8.84 25.60 0.23 -29.41 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.95 13.29 21.45 0.28 -58.66 16 9 Si 0.96 46.58 29.54 68.60 2.03 48.60 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.51 -20.23 5.06 -856.36 -4.33 -24.56 16 14 C 0.06 2.15 5.37 86.45 0.46 2.61 16 15 C -0.18 -5.20 7.29 -8.49 -0.06 -5.26 16 16 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 17 C -0.13 -2.64 10.30 32.00 0.33 -2.31 16 18 C -0.16 -4.19 6.98 -9.90 -0.07 -4.26 16 19 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 20 C 0.05 1.56 6.14 86.45 0.53 2.09 16 21 H 0.05 1.85 6.39 -2.39 -0.02 1.83 16 22 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.07 2.00 6.12 -2.39 -0.01 1.99 16 24 H -0.01 -0.53 7.15 -2.39 -0.02 -0.54 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.05 1.86 5.37 -2.39 -0.01 1.84 16 28 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 29 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.49 5.99 -2.39 -0.01 1.48 16 Total: -1.00 -66.24 254.34 1.76 -64.48 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.08 Total: 6.15 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 2.70 Total: -36.00 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -4.05 Total: -83.23 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -66.24 1.76 -64.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.541 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds