Wall clock time and date at job start Sun Mar 29 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46819 * 2 1 4 4 C 1.52997 * 109.47723 * 120.00123 * 2 1 3 5 5 C 1.50698 * 109.47257 * 185.00234 * 4 2 1 6 6 H 1.08002 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99923 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00034 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47055 * 59.99830 * 9 7 5 11 11 H 1.48500 * 109.46953 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47203 * 299.99536 * 9 7 5 13 13 N 1.46900 * 109.46777 * 240.00368 * 2 1 3 14 14 C 1.48558 * 111.00086 * 67.35914 * 13 2 1 15 15 C 1.54380 * 104.59604 * 200.95766 * 14 13 2 16 16 H 1.08999 * 117.60491 * 244.71885 * 15 14 13 17 17 C 1.52995 * 118.12711 * 87.22841 * 15 14 13 18 18 C 1.52991 * 60.54804 * 268.33470 * 17 15 14 19 19 H 1.09005 * 119.52563 * 248.26255 * 18 17 15 20 20 C 1.48560 * 111.00301 * 311.94015 * 13 2 1 21 21 H 1.09003 * 109.46649 * 187.90853 * 1 2 3 22 22 H 1.08999 * 109.46922 * 307.90016 * 1 2 3 23 23 H 1.09001 * 109.47659 * 67.90611 * 1 2 3 24 24 H 1.09002 * 109.46756 * 305.00439 * 4 2 1 25 25 H 1.09003 * 109.47071 * 64.99778 * 4 2 1 26 26 H 0.97000 * 119.99992 * 180.02562 * 8 7 5 27 27 H 1.08999 * 110.41438 * 319.73831 * 14 13 2 28 28 H 1.09010 * 110.41221 * 82.18043 * 14 13 2 29 29 H 1.08999 * 117.44326 * 15.97956 * 17 15 14 30 30 H 1.09003 * 117.44183 * 160.68350 * 17 15 14 31 31 H 1.08999 * 110.40972 * 277.82507 * 20 13 2 32 32 H 1.09004 * 110.40757 * 40.25883 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0790 -0.0860 0.5390 7 6 4.2306 -1.1934 2.3575 8 7 3.5767 -1.8378 3.2993 9 14 6.0923 -1.0621 2.4358 10 1 6.4855 0.3686 2.4954 11 1 6.5874 -1.7620 3.6483 12 1 6.6840 -1.6880 1.2261 13 7 2.0196 -0.6924 -1.1995 14 6 1.6936 0.0762 -2.4283 15 6 1.7589 -0.9643 -3.5668 16 1 2.5297 -0.8342 -4.3264 17 6 0.4970 -1.7708 -3.8800 18 6 1.5150 -2.3245 -2.8812 19 1 2.0949 -3.2103 -3.1404 20 6 1.3231 -1.9913 -1.3861 21 1 -0.3633 -1.0179 0.1414 22 1 -0.3633 0.6313 0.8109 23 1 -0.3634 0.3865 -0.9522 24 1 1.6055 -0.2618 2.1369 25 1 1.7518 -1.7715 1.2055 26 1 4.0611 -2.2445 4.0347 27 1 0.6918 0.4997 -2.3573 28 1 2.4296 0.8638 -2.5905 29 1 -0.4476 -1.4006 -3.4815 30 1 0.4379 -2.2522 -4.8562 31 1 1.7800 -2.7605 -0.7634 32 1 0.2632 -1.8914 -1.1518 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:18 Heat of formation + Delta-G solvation = 34.948620 kcal Electronic energy + Delta-G solvation = -12663.075243 eV Core-core repulsion = 10624.552811 eV Total energy + Delta-G solvation = -2038.522431 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67504 -35.47227 -32.51763 -29.95969 -27.98869 -27.28803 -24.26769 -22.69342 -20.71452 -19.89586 -18.55134 -16.14420 -15.99138 -15.16949 -14.39828 -13.57769 -13.40901 -13.20898 -12.80899 -11.99537 -11.76126 -11.53764 -11.47981 -11.14769 -10.86145 -10.75882 -10.59841 -10.38169 -9.99807 -9.80936 -9.56763 -9.16077 -8.97786 -8.22676 -7.53617 -5.85527 -3.83298 3.43521 3.46688 3.50946 3.84623 4.57938 4.61185 4.85650 4.99713 5.31028 5.43403 5.51755 5.55341 5.73302 5.81620 5.86211 5.92722 6.02070 6.03617 6.23755 6.36704 6.37050 6.52093 6.61048 6.72814 7.00319 7.49494 7.60489 7.84750 8.02261 8.15364 8.61497 9.22168 9.78121 11.26506 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.045724 B = 0.010084 C = 0.009277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.224677 B = 2775.920752 C = 3017.490487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.070 0.930 4 C 0.034 3.966 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.479 5.479 14 C 0.052 3.948 15 C -0.166 4.166 16 H 0.111 0.889 17 C -0.157 4.157 18 C -0.161 4.161 19 H 0.112 0.888 20 C 0.058 3.942 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.258 0.742 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 1.212 -11.240 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.035 4.035 3 H 0.088 0.912 4 C -0.004 4.004 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.202 5.202 14 C -0.075 4.075 15 C -0.185 4.185 16 H 0.129 0.871 17 C -0.194 4.194 18 C -0.180 4.180 19 H 0.130 0.870 20 C -0.069 4.069 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.231 1.067 -10.963 12.193 hybrid contribution 0.226 0.092 0.012 0.244 sum -5.005 1.159 -10.951 12.096 Atomic orbital electron populations 1.22543 0.99764 1.01651 1.00499 1.22059 0.90184 0.98647 0.92573 0.91176 1.19122 0.96334 0.95266 0.89636 1.21140 0.91828 1.33017 1.06939 0.92247 1.25008 0.98057 0.95872 0.95991 1.69958 1.35301 1.36946 1.12362 0.86677 0.86338 0.77981 0.77066 1.20516 1.21649 1.20365 1.65791 1.52239 1.01607 1.00606 1.22702 0.99337 0.95784 0.89713 1.23375 1.00197 0.94125 1.00772 0.87126 1.23045 0.93732 1.02972 0.99634 1.23473 1.03518 0.97724 0.93321 0.87041 1.22683 0.97350 0.94140 0.92732 0.92496 0.92519 0.93904 0.96370 0.96444 0.93287 0.94167 0.90400 0.89503 0.88617 0.89352 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.15 37.16 0.30 -2.96 16 2 C 0.07 1.55 2.29 -67.71 -0.15 1.39 16 3 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 4 C 0.03 0.87 4.47 -27.89 -0.12 0.75 16 5 C -0.49 -14.10 8.84 -34.44 -0.30 -14.41 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.48 -9.57 5.06 -222.02 -1.12 -10.69 16 14 C 0.05 0.86 6.14 -2.18 -0.01 0.85 16 15 C -0.17 -2.39 7.13 -89.24 -0.64 -3.03 16 16 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.16 -1.96 10.07 -26.74 -0.27 -2.23 16 18 C -0.16 -2.45 7.13 -89.25 -0.64 -3.08 16 19 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 20 C 0.06 1.06 5.34 -2.18 -0.01 1.05 16 21 H 0.06 1.00 6.40 -51.93 -0.33 0.67 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.67 6.11 -51.93 -0.32 0.35 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.02 0.48 7.15 -51.93 -0.37 0.11 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.04 0.62 5.99 -51.93 -0.31 0.31 16 28 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.80 7.67 -51.93 -0.40 1.40 16 32 H 0.05 0.82 5.38 -51.93 -0.28 0.54 16 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -30.35 254.08 -8.46 -38.81 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.93 Total: -2.13 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.94 Total: -20.30 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.39 Total: -37.66 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.35 -8.46 -38.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.758 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds