Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30266 * 126.28107 * 2 1 4 4 N 1.28671 * 109.38324 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37693 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.28171 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46792 * 90.02927 * 6 5 4 8 8 C 1.46498 * 119.99475 * 269.99723 * 7 6 5 9 9 C 1.36932 * 120.00283 * 90.00003 * 7 6 5 10 10 H 1.08000 * 119.99951 * 342.17950 * 9 7 6 11 11 C 1.38806 * 120.00189 * 162.45777 * 9 7 6 12 12 N 1.31625 * 120.00046 * 344.97385 * 11 9 7 13 13 Si 1.86797 * 120.00287 * 164.97340 * 11 9 7 14 14 H 1.48502 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47365 * 119.99820 * 13 11 9 16 16 H 1.48500 * 109.47369 * 239.99655 * 13 11 9 17 17 O 1.34359 * 126.28227 * 180.29102 * 2 1 3 18 18 H 1.08999 * 109.47235 * 89.97239 * 1 2 3 19 19 H 1.08998 * 109.47318 * 209.97348 * 1 2 3 20 20 H 1.08998 * 109.47276 * 329.97530 * 1 2 3 21 21 H 1.09003 * 109.47620 * 330.03003 * 6 5 4 22 22 H 1.09004 * 109.47253 * 210.02506 * 6 5 4 23 23 H 1.08998 * 109.47606 * 264.96156 * 8 7 6 24 24 H 1.09002 * 109.47621 * 24.96781 * 8 7 6 25 25 H 1.09002 * 109.46789 * 144.96434 * 8 7 6 26 26 H 0.96999 * 120.00410 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0501 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5653 -0.6254 0.0004 6 6 4.8176 -1.4638 0.0003 7 7 5.2229 -1.7363 1.3816 8 6 6.1314 -0.8182 2.0729 9 6 4.7526 -2.8490 2.0264 10 1 3.8818 -3.3643 1.6487 11 6 5.3915 -3.3113 3.1686 12 7 6.5984 -2.8796 3.4680 13 14 4.5387 -4.5460 4.2810 14 1 3.1997 -4.8697 3.7264 15 1 5.3533 -5.7851 4.3613 16 1 4.3855 -3.9655 5.6392 17 8 2.3021 -1.0831 -0.0055 18 1 -0.3633 0.0005 -1.0276 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3634 0.8897 0.5142 21 1 5.6149 -0.9262 -0.5130 22 1 4.6245 -2.4053 -0.5141 23 1 7.1553 -1.1792 1.9768 24 1 6.0528 0.1741 1.6286 25 1 5.8620 -0.7662 3.1278 26 1 7.0451 -3.2029 4.2660 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701611253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = 59.735511 kcal Electronic energy + Delta-G solvation = -12422.701271 eV Core-core repulsion = 10118.568763 eV Total energy + Delta-G solvation = -2304.132507 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.49771 -35.90956 -35.46330 -32.73028 -31.34335 -28.61687 -26.33490 -25.73789 -22.56253 -21.97681 -20.86051 -17.01393 -16.71102 -16.41706 -15.01419 -14.48045 -14.32570 -13.65475 -13.36279 -13.00035 -12.70551 -11.88036 -11.74894 -11.51351 -11.26788 -10.99315 -10.90410 -10.55202 -10.34267 -10.10398 -10.05730 -8.91865 -8.70177 -7.13659 -5.91908 -3.37333 1.79782 2.92103 3.00638 3.30013 3.36976 3.39361 4.35694 4.43095 4.95737 5.28995 5.31398 5.34722 5.42699 5.58996 5.90712 6.12602 6.21053 6.21998 6.42548 6.71787 7.31193 7.57535 7.69033 8.14601 8.94537 9.01585 9.61352 10.05752 11.12729 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.010915 C = 0.009332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.405288 B = 2564.714870 C = 2999.752187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.127 3.873 3 N -0.297 5.297 4 N -0.312 5.312 5 C 0.176 3.824 6 C 0.228 3.772 7 N -0.577 5.577 8 C 0.155 3.845 9 C -0.275 4.275 10 H 0.075 0.925 11 C 0.010 3.990 12 N -0.898 5.898 13 Si 0.909 3.091 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.287 1.287 17 O -0.225 6.225 18 H 0.090 0.910 19 H 0.087 0.913 20 H 0.098 0.902 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.039 0.961 24 H 0.010 0.990 25 H 0.049 0.951 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 2.105 -5.869 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.085 4.085 3 N -0.145 5.145 4 N -0.159 5.159 5 C -0.039 4.039 6 C 0.095 3.905 7 N -0.297 5.297 8 C 0.011 3.989 9 C -0.404 4.404 10 H 0.093 0.907 11 C -0.189 4.189 12 N -0.542 5.542 13 Si 0.738 3.262 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.213 1.213 17 O -0.103 6.103 18 H 0.108 0.892 19 H 0.106 0.894 20 H 0.116 0.884 21 H 0.111 0.889 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.605 3.267 -5.666 10.031 hybrid contribution -0.857 -1.750 0.840 2.122 sum -8.462 1.517 -4.826 9.859 Atomic orbital electron populations 1.20164 0.81355 1.05016 1.04301 1.27802 0.97662 0.80747 1.02326 1.74207 0.96781 1.26187 1.17372 1.74291 1.11488 1.10310 1.19822 1.31363 0.85779 0.92392 0.94415 1.19533 0.85610 0.96056 0.89338 1.44120 1.52296 1.24741 1.08502 1.21006 0.93553 0.88122 0.96252 1.19327 1.08881 1.04052 1.08147 0.90678 1.24966 0.95514 0.98919 0.99499 1.70135 1.11401 1.45943 1.26681 0.86124 0.79041 0.80393 0.80604 1.20147 1.21331 1.21324 1.84866 1.18203 1.38106 1.69130 0.89165 0.89413 0.88363 0.88857 0.89846 0.94292 0.97185 0.93196 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 36.01 0.38 -0.17 15 2 C 0.13 2.24 8.48 -12.94 -0.11 2.13 15 3 N -0.30 -6.07 12.22 32.55 0.40 -5.67 15 4 N -0.31 -6.87 12.22 32.55 0.40 -6.47 15 5 C 0.18 3.71 8.06 -12.94 -0.10 3.61 15 6 C 0.23 4.70 6.27 -5.19 -0.03 4.67 15 7 N -0.58 -14.50 2.91 -182.50 -0.53 -15.03 15 8 C 0.15 3.86 8.97 59.85 0.54 4.40 15 9 C -0.28 -7.48 9.70 -15.06 -0.15 -7.63 15 10 H 0.08 2.00 7.87 -52.49 -0.41 1.59 15 11 C 0.01 0.29 5.08 -17.43 -0.09 0.20 15 12 N -0.90 -25.57 10.51 55.49 0.58 -24.99 15 13 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 15 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 17 O -0.22 -4.52 10.87 5.40 0.06 -4.46 15 18 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.09 1.71 8.07 -51.93 -0.42 1.29 15 22 H 0.08 1.58 8.04 -51.93 -0.42 1.16 15 23 H 0.04 1.01 7.48 -51.93 -0.39 0.62 15 24 H 0.01 0.22 8.03 -51.93 -0.42 -0.20 15 25 H 0.05 1.35 7.01 -51.93 -0.36 0.99 15 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 235.95 15.07 3.56 3.56 Total: -1.00 -31.81 235.95 -2.95 -34.76 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: -2.82 Total: -5.36 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 0.43 Total: 7.20 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.85 Total: -52.16 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.06 Total: -4.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.81 -2.95 -34.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701611253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.498 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds