Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30266 * 126.28107 * 2 1 4 4 N 1.28671 * 109.38324 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.37693 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.28171 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46792 * 90.02927 * 6 5 4 8 8 C 1.46498 * 119.99475 * 269.99723 * 7 6 5 9 9 C 1.36932 * 120.00283 * 90.00003 * 7 6 5 10 10 H 1.08000 * 119.99951 * 342.17950 * 9 7 6 11 11 C 1.38806 * 120.00189 * 162.45777 * 9 7 6 12 12 N 1.31625 * 120.00046 * 344.97385 * 11 9 7 13 13 Si 1.86797 * 120.00287 * 164.97340 * 11 9 7 14 14 H 1.48502 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47365 * 119.99820 * 13 11 9 16 16 H 1.48500 * 109.47369 * 239.99655 * 13 11 9 17 17 O 1.34359 * 126.28227 * 180.29102 * 2 1 3 18 18 H 1.08999 * 109.47235 * 89.97239 * 1 2 3 19 19 H 1.08998 * 109.47318 * 209.97348 * 1 2 3 20 20 H 1.08998 * 109.47276 * 329.97530 * 1 2 3 21 21 H 1.09003 * 109.47620 * 330.03003 * 6 5 4 22 22 H 1.09004 * 109.47253 * 210.02506 * 6 5 4 23 23 H 1.08998 * 109.47606 * 264.96156 * 8 7 6 24 24 H 1.09002 * 109.47621 * 24.96781 * 8 7 6 25 25 H 1.09002 * 109.46789 * 144.96434 * 8 7 6 26 26 H 0.96999 * 120.00410 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2778 1.0501 0.0000 4 7 3.5090 0.6761 0.0005 5 6 3.5653 -0.6254 0.0004 6 6 4.8176 -1.4638 0.0003 7 7 5.2229 -1.7363 1.3816 8 6 6.1314 -0.8182 2.0729 9 6 4.7526 -2.8490 2.0264 10 1 3.8818 -3.3643 1.6487 11 6 5.3915 -3.3113 3.1686 12 7 6.5984 -2.8796 3.4680 13 14 4.5387 -4.5460 4.2810 14 1 3.1997 -4.8697 3.7264 15 1 5.3533 -5.7851 4.3613 16 1 4.3855 -3.9655 5.6392 17 8 2.3021 -1.0831 -0.0055 18 1 -0.3633 0.0005 -1.0276 19 1 -0.3634 -0.8902 0.5134 20 1 -0.3634 0.8897 0.5142 21 1 5.6149 -0.9262 -0.5130 22 1 4.6245 -2.4053 -0.5141 23 1 7.1553 -1.1792 1.9768 24 1 6.0528 0.1741 1.6286 25 1 5.8620 -0.7662 3.1278 26 1 7.0451 -3.2029 4.2660 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701611253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = 34.296239 kcal Electronic energy + Delta-G solvation = -12423.804400 eV Core-core repulsion = 10118.568763 eV Total energy + Delta-G solvation = -2305.235637 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.04232 -37.78997 -37.03151 -34.30678 -33.04684 -30.11586 -28.18595 -27.50357 -24.32473 -23.42965 -22.62420 -18.93860 -18.32961 -17.96129 -16.95708 -16.07963 -15.72641 -15.45317 -15.14951 -13.97526 -13.91701 -13.46944 -13.33804 -13.31307 -12.92077 -12.85116 -12.70147 -12.45529 -12.10317 -12.00635 -11.84071 -10.79033 -10.39595 -9.14016 -7.96514 -5.45146 0.30280 1.39401 1.44246 1.46601 1.54759 1.56067 2.43891 3.03679 3.26910 3.54299 3.62467 4.04609 4.49001 4.54125 4.59391 4.64644 4.75373 4.78260 4.82935 5.09741 5.25810 5.51271 5.61877 6.13924 6.97532 7.40272 7.63673 8.05553 9.07596 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.010915 C = 0.009332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.405288 B = 2564.714870 C = 2999.752187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.147 3.853 3 N -0.333 5.333 4 N -0.331 5.331 5 C 0.164 3.836 6 C 0.231 3.769 7 N -0.597 5.597 8 C 0.173 3.827 9 C -0.283 4.283 10 H 0.077 0.923 11 C -0.042 4.042 12 N -0.929 5.929 13 Si 0.972 3.028 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.291 1.291 17 O -0.235 6.235 18 H 0.122 0.878 19 H 0.106 0.894 20 H 0.116 0.884 21 H 0.113 0.887 22 H 0.099 0.901 23 H 0.023 0.977 24 H 0.027 0.973 25 H 0.019 0.981 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.115 1.766 -6.477 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 N -0.179 5.179 4 N -0.177 5.177 5 C -0.052 4.052 6 C 0.099 3.901 7 N -0.318 5.318 8 C 0.029 3.971 9 C -0.412 4.412 10 H 0.095 0.905 11 C -0.239 4.239 12 N -0.574 5.574 13 Si 0.799 3.201 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.218 1.218 17 O -0.115 6.115 18 H 0.141 0.859 19 H 0.125 0.875 20 H 0.135 0.865 21 H 0.131 0.869 22 H 0.118 0.882 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.597 2.955 -6.314 11.861 hybrid contribution -0.380 -1.578 0.925 1.868 sum -9.977 1.377 -5.389 11.423 Atomic orbital electron populations 1.20632 0.76570 1.06797 1.06886 1.29134 0.99700 0.79305 0.98376 1.74165 0.96571 1.27335 1.19849 1.74223 1.12760 1.10723 1.19994 1.30908 0.86412 0.92151 0.95722 1.19702 0.85895 0.97037 0.87420 1.44245 1.52844 1.24478 1.10194 1.20689 0.92756 0.88971 0.94709 1.19601 1.08704 1.04442 1.08485 0.90485 1.25748 0.96139 1.01069 1.00896 1.70267 1.12633 1.47504 1.27015 0.85148 0.78405 0.78184 0.78331 1.19052 1.21061 1.21811 1.84857 1.18125 1.38999 1.69480 0.85945 0.87543 0.86547 0.86867 0.88245 0.95863 0.95447 0.96217 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 10.51 71.24 0.75 -0.17 15 2 C 0.15 4.81 8.48 88.34 0.75 5.56 15 3 N -0.33 -13.07 12.22 -165.51 -2.02 -15.10 15 4 N -0.33 -14.24 12.22 -165.50 -2.02 -16.26 15 5 C 0.16 6.74 8.06 88.34 0.71 7.45 15 6 C 0.23 9.26 6.27 85.63 0.54 9.80 15 7 N -0.60 -29.84 2.91 -731.30 -2.13 -31.97 15 8 C 0.17 8.75 8.97 127.77 1.15 9.90 15 9 C -0.28 -15.28 9.70 84.03 0.82 -14.46 15 10 H 0.08 4.03 7.87 -2.91 -0.02 4.01 15 11 C -0.04 -2.32 5.08 84.86 0.43 -1.89 15 12 N -0.93 -53.66 10.51 21.65 0.23 -53.43 15 13 Si 0.97 44.04 29.58 68.60 2.03 46.07 15 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 16 H -0.29 -13.30 7.11 99.48 0.71 -12.60 15 17 O -0.24 -9.02 10.87 -3.60 -0.04 -9.06 15 18 H 0.12 1.50 8.14 -2.39 -0.02 1.48 15 19 H 0.11 1.57 8.14 -2.39 -0.02 1.55 15 20 H 0.12 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.11 4.02 8.07 -2.39 -0.02 4.00 15 22 H 0.10 3.62 8.04 -2.38 -0.02 3.60 15 23 H 0.02 1.22 7.48 -2.39 -0.02 1.20 15 24 H 0.03 1.24 8.03 -2.39 -0.02 1.23 15 25 H 0.02 1.07 7.01 -2.39 -0.02 1.05 15 26 H 0.25 14.11 8.31 -92.71 -0.77 13.34 15 Total: -1.00 -68.05 235.95 2.36 -65.70 By element: Atomic # 1 Polarization: -3.31 SS G_CDS: 1.18 Total: -2.13 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.14 Total: 16.19 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -5.95 Total: -116.77 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.04 Total: -9.06 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.05 2.36 -65.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701611253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.994 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds