Wall clock time and date at job start Sun Mar 29 2020 21:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47088 * 2 1 4 4 C 1.36935 * 119.99823 * 274.24273 * 3 2 1 5 5 H 1.08004 * 120.00093 * 36.99277 * 4 3 2 6 6 C 1.38805 * 119.99670 * 217.00108 * 4 3 2 7 7 N 1.31616 * 120.00528 * 22.85602 * 6 4 3 8 8 Si 1.86808 * 119.99684 * 202.86088 * 6 4 3 9 9 H 1.48504 * 109.47112 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47082 * 119.99684 * 8 6 4 11 11 H 1.48499 * 109.46866 * 239.99714 * 8 6 4 12 12 C 1.46494 * 119.99764 * 94.24022 * 3 2 1 13 13 C 1.50705 * 109.47299 * 269.99895 * 12 3 2 14 14 C 1.40896 * 125.30319 * 94.72494 * 13 12 3 15 15 N 1.29944 * 109.39283 * 180.26550 * 14 13 12 16 16 O 1.41879 * 107.41295 * 359.97438 * 15 14 13 17 17 N 1.29948 * 125.30002 * 275.02787 * 13 12 3 18 18 H 1.09002 * 109.47591 * 299.99979 * 1 2 3 19 19 H 1.08999 * 109.47169 * 60.00413 * 1 2 3 20 20 H 1.09001 * 109.47294 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47285 * 239.99693 * 2 1 3 22 22 H 1.08999 * 109.47169 * 119.99586 * 2 1 3 23 23 H 0.97005 * 120.00245 * 179.97438 * 7 6 4 24 24 H 1.09005 * 109.46698 * 150.00101 * 12 3 2 25 25 H 1.09001 * 109.47869 * 30.00252 * 12 3 2 26 26 H 1.07999 * 125.29978 * 0.24013 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1638 2.0560 -1.1827 5 1 1.4503 1.9084 -1.9799 6 6 3.2284 2.9295 -1.3569 7 7 4.3156 2.7959 -0.6272 8 14 3.1180 4.2949 -2.6270 9 1 1.8013 4.2297 -3.3106 10 1 3.2618 5.6104 -1.9533 11 1 4.2032 4.1295 -3.6270 12 6 2.3509 2.0406 1.2652 13 6 1.1290 2.7390 1.8042 14 6 0.2279 2.1962 2.7415 15 7 -0.7137 3.0582 2.9840 16 8 -0.4485 4.2091 2.1978 17 7 0.7394 3.9335 1.4726 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 5.0597 3.4062 -0.7492 24 1 3.1424 2.7709 1.0972 25 1 2.6906 1.2957 1.9849 26 1 0.3073 1.2163 3.1885 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851744724.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:57 Heat of formation + Delta-G solvation = 88.905434 kcal Electronic energy + Delta-G solvation = -12678.115576 eV Core-core repulsion = 10375.247971 eV Total energy + Delta-G solvation = -2302.867605 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12470 -37.95724 -34.37008 -33.83607 -33.46234 -30.81774 -28.36052 -25.66939 -24.14094 -22.51048 -21.66964 -18.88723 -17.84666 -17.01136 -16.70861 -15.80692 -15.71190 -15.43708 -14.87653 -14.20417 -13.97431 -13.30743 -13.02709 -12.87837 -12.66154 -12.54948 -12.49457 -12.14899 -12.04285 -11.89298 -11.72889 -11.28716 -10.58706 -8.72932 -7.97675 -5.54704 -0.26409 1.27378 1.39815 1.46144 1.52093 1.87771 2.44083 2.47446 3.13501 3.36138 3.69608 4.24205 4.38612 4.45364 4.68941 4.80070 4.84778 4.94909 5.09428 5.30000 5.45066 5.56038 5.66245 6.18058 6.39300 7.05658 7.72982 8.20819 8.99985 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.014914 C = 0.012097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.251084 B = 1876.972461 C = 2314.046402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 N -0.581 5.581 4 C -0.268 4.268 5 H 0.048 0.952 6 C -0.015 4.015 7 N -0.898 5.898 8 Si 0.938 3.062 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.281 1.281 12 C 0.196 3.804 13 C 0.070 3.930 14 C 0.084 3.916 15 N -0.308 5.308 16 O -0.041 6.041 17 N -0.309 5.309 18 H 0.043 0.957 19 H 0.021 0.979 20 H 0.076 0.924 21 H 0.043 0.957 22 H 0.077 0.923 23 H 0.257 0.743 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 -6.177 5.877 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 N -0.302 5.302 4 C -0.399 4.399 5 H 0.066 0.934 6 C -0.215 4.215 7 N -0.541 5.541 8 Si 0.767 3.233 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.067 3.933 13 C -0.116 4.116 14 C -0.119 4.119 15 N -0.055 5.055 16 O -0.171 6.171 17 N -0.060 5.060 18 H 0.062 0.938 19 H 0.040 0.960 20 H 0.095 0.905 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -4.627 -4.854 5.803 8.868 hybrid contribution 0.342 0.516 -0.872 1.069 sum -4.285 -4.338 4.931 7.842 Atomic orbital electron populations 1.22251 0.98349 1.01232 0.99965 1.21155 0.92661 0.84304 1.00895 1.43953 1.75635 1.09744 1.00873 1.19043 1.05038 1.22185 0.93635 0.93422 1.25576 0.94122 1.02141 0.99633 1.70028 1.03590 1.37174 1.43272 0.85688 0.77615 0.80415 0.79608 1.20242 1.22004 1.20765 1.19874 0.88971 0.97010 0.87475 1.26784 1.01697 0.90565 0.92543 1.26708 0.88755 1.02341 0.94141 1.79676 1.19749 0.94985 1.11102 1.93303 1.38117 1.34426 1.51245 1.80057 0.96555 1.17153 1.12205 0.93770 0.95990 0.90511 0.93888 0.90520 0.93400 0.89983 0.87665 0.72624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 10.22 71.98 0.74 -4.11 15 2 C 0.13 4.62 6.44 86.38 0.56 5.18 15 3 N -0.58 -25.52 2.42 -706.34 -1.71 -27.22 15 4 C -0.27 -13.96 9.45 84.03 0.79 -13.17 15 5 H 0.05 2.58 7.93 -2.91 -0.02 2.56 15 6 C -0.02 -0.81 4.92 84.86 0.42 -0.39 15 7 N -0.90 -48.89 11.53 21.65 0.25 -48.64 15 8 Si 0.94 44.78 29.61 68.60 2.03 46.81 15 9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 10 H -0.29 -14.36 7.11 99.48 0.71 -13.65 15 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 15 12 C 0.20 7.85 5.88 85.64 0.50 8.35 15 13 C 0.07 2.66 6.63 43.49 0.29 2.95 15 14 C 0.08 2.44 10.52 85.62 0.90 3.34 15 15 N -0.31 -10.76 12.98 -56.80 -0.74 -11.50 15 16 O -0.04 -1.77 13.71 70.15 0.96 -0.81 15 17 N -0.31 -14.06 12.98 -47.16 -0.61 -14.67 15 18 H 0.04 1.29 6.54 -2.39 -0.02 1.27 15 19 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 20 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.04 1.57 8.07 -2.39 -0.02 1.55 15 22 H 0.08 2.11 7.84 -2.39 -0.02 2.09 15 23 H 0.26 13.59 8.31 -92.70 -0.77 12.82 15 24 H 0.08 4.00 5.53 -2.38 -0.01 3.99 15 25 H 0.11 3.30 7.86 -2.39 -0.02 3.28 15 26 H 0.26 4.21 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -63.59 235.04 5.56 -58.03 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: 1.18 Total: -4.15 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.20 Total: 2.15 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -2.81 Total: -102.03 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: 0.96 Total: -0.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.59 5.56 -58.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851744724.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.938 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds