Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35184 * 126.43571 * 2 1 4 4 O 1.33936 * 108.79094 * 179.97438 * 3 2 1 5 5 C 1.34945 * 109.37368 * 359.97438 * 4 3 2 6 6 C 1.46404 * 125.99750 * 179.97438 * 5 4 3 7 7 O 1.21663 * 119.99940 * 180.02562 * 6 5 4 8 8 O 1.34893 * 119.99992 * 359.75371 * 6 5 4 9 9 C 1.34842 * 117.00124 * 180.27046 * 8 6 5 10 10 H 1.08003 * 119.99807 * 0.02562 * 9 8 6 11 11 C 1.38800 * 120.00163 * 179.97438 * 9 8 6 12 12 N 1.31430 * 119.99641 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47079 * 60.00324 * 13 11 9 15 15 H 1.48500 * 109.46664 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47336 * 300.00026 * 13 11 9 17 17 C 1.36713 * 107.99986 * 0.26631 * 5 4 3 18 18 H 1.08998 * 109.46736 * 89.97757 * 1 2 3 19 19 H 1.09001 * 109.47316 * 209.97908 * 1 2 3 20 20 H 1.09004 * 109.46872 * 329.98141 * 1 2 3 21 21 H 1.08003 * 125.60456 * 359.97438 * 3 2 1 22 22 H 0.96997 * 119.99157 * 179.97438 * 12 11 9 23 23 H 1.08003 * 126.64177 * 179.69461 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3099 1.0876 0.0000 4 8 3.5863 0.6816 0.0006 5 6 3.6270 -0.6672 0.0015 6 6 4.8369 -1.4916 0.0018 7 8 4.7463 -2.7048 0.0022 8 8 6.0521 -0.9060 -0.0039 9 6 7.1251 -1.7225 -0.0089 10 1 6.9885 -2.7938 -0.0087 11 6 8.4053 -1.1862 -0.0155 12 7 8.5715 0.1176 -0.0163 13 14 9.8918 -2.3174 -0.0232 14 1 9.8556 -3.1741 -1.2355 15 1 11.1335 -1.5029 -0.0289 16 1 9.8681 -3.1743 1.1894 17 6 2.3401 -1.1287 -0.0045 18 1 -0.3633 0.0004 -1.0277 19 1 -0.3634 -0.8902 0.5135 20 1 -0.3633 0.8899 0.5141 21 1 1.9769 2.1150 -0.0004 22 1 9.4662 0.4923 -0.0205 23 1 2.0260 -2.1620 -0.0101 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884711807.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = -92.169950 kcal Electronic energy + Delta-G solvation = -11734.373843 eV Core-core repulsion = 9320.954286 eV Total energy + Delta-G solvation = -2413.419557 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.68263 -40.93429 -37.46789 -35.16835 -34.41076 -31.68257 -28.48092 -27.51131 -24.82399 -22.14391 -21.27061 -19.98686 -18.91688 -17.76182 -17.53637 -16.66202 -16.26721 -16.25736 -14.75506 -14.43584 -14.09683 -13.90972 -13.70083 -13.48124 -13.29714 -12.52502 -12.47940 -12.22738 -12.13831 -11.51259 -10.80537 -10.72415 -9.61677 -8.63676 -6.43147 -0.06144 1.28987 1.31709 1.44992 1.49796 1.73265 1.98703 2.14324 2.74395 2.91629 3.81948 3.95619 4.20359 4.47123 4.70983 4.92080 4.93594 5.06639 5.08152 5.12361 5.56503 5.68524 5.95074 6.40712 6.78426 7.56248 8.56715 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.089044 B = 0.008324 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.377424 B = 3363.113156 C = 3662.333193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.198 4.198 3 C -0.004 4.004 4 O -0.176 6.176 5 C -0.074 4.074 6 C 0.467 3.533 7 O -0.561 6.561 8 O -0.230 6.230 9 C -0.426 4.426 10 H 0.091 0.909 11 C -0.005 4.005 12 N -0.897 5.897 13 Si 1.029 2.971 14 H -0.258 1.258 15 H -0.257 1.257 16 H -0.258 1.258 17 C -0.120 4.120 18 H 0.081 0.919 19 H 0.072 0.928 20 H 0.092 0.908 21 H 0.258 0.742 22 H 0.283 0.717 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 2.527 0.004 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.199 4.199 3 C -0.073 4.073 4 O -0.071 6.071 5 C -0.124 4.124 6 C 0.317 3.683 7 O -0.461 6.461 8 O -0.138 6.138 9 C -0.501 4.501 10 H 0.109 0.891 11 C -0.206 4.206 12 N -0.533 5.533 13 Si 0.846 3.154 14 H -0.182 1.182 15 H -0.180 1.180 16 H -0.182 1.182 17 C -0.140 4.140 18 H 0.099 0.901 19 H 0.091 0.909 20 H 0.110 0.890 21 H 0.273 0.727 22 H 0.093 0.907 23 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.273 2.592 0.004 11.567 hybrid contribution 0.686 -0.528 -0.008 0.866 sum -10.586 2.063 -0.005 10.786 Atomic orbital electron populations 1.20269 0.85158 1.04230 1.03470 1.20880 0.99576 0.90661 1.08831 1.25338 0.78510 1.02251 1.01157 1.84195 1.31474 1.21166 1.70274 1.20874 0.93575 0.81062 1.16924 1.19752 0.83696 0.85911 0.78976 1.90667 1.87351 1.14618 1.53468 1.84026 1.13694 1.40534 1.75510 1.21640 0.82573 0.90714 1.55177 0.89136 1.26814 1.00990 0.98769 0.94042 1.70096 1.25330 1.12696 1.45133 0.84541 0.74007 0.76745 0.80093 1.18205 1.18033 1.18213 1.22049 0.89246 1.01909 1.00760 0.90061 0.90859 0.88969 0.72669 0.90714 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.39 71.24 0.74 -0.47 14 2 C -0.20 -5.31 6.14 -20.07 -0.12 -5.44 14 3 C 0.00 -0.10 12.00 67.12 0.81 0.71 14 4 O -0.18 -7.29 10.67 -5.16 -0.06 -7.34 14 5 C -0.07 -3.43 7.18 24.04 0.17 -3.25 14 6 C 0.47 26.62 7.86 69.95 0.55 27.17 14 7 O -0.56 -33.15 16.12 19.30 0.31 -32.84 14 8 O -0.23 -14.81 9.75 11.21 0.11 -14.70 14 9 C -0.43 -26.98 9.65 67.95 0.66 -26.32 14 10 H 0.09 5.68 6.86 -2.91 -0.02 5.66 14 11 C 0.00 -0.29 5.50 84.89 0.47 0.18 14 12 N -0.90 -54.51 13.67 21.63 0.30 -54.22 14 13 Si 1.03 43.75 29.55 68.60 2.03 45.78 14 14 H -0.26 -10.47 7.11 99.48 0.71 -9.76 14 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 14 16 H -0.26 -10.47 7.11 99.48 0.71 -9.77 14 17 C -0.12 -4.32 10.57 22.41 0.24 -4.08 14 18 H 0.08 1.12 8.14 -2.39 -0.02 1.10 14 19 H 0.07 1.12 8.14 -2.39 -0.02 1.10 14 20 H 0.09 1.03 8.14 -2.38 -0.02 1.01 14 21 H 0.26 3.86 8.06 -2.91 -0.02 3.84 14 22 H 0.28 15.44 8.31 -92.71 -0.77 14.67 14 23 H 0.17 5.50 8.06 -2.91 -0.02 5.47 14 Total: -1.00 -78.15 226.08 7.42 -70.74 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.23 Total: 4.10 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 3.50 Total: -11.51 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.30 Total: -54.22 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: 0.37 Total: -54.89 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -78.15 7.42 -70.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884711807.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.434 kcal (2) G-P(sol) polarization free energy of solvation -78.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds