Wall clock time and date at job start Sun Mar 29 2020 21:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86796 * 119.99928 * 2 1 4 4 H 1.48501 * 109.47194 * 270.00034 * 3 2 1 5 5 H 1.48506 * 109.47379 * 30.00259 * 3 2 1 6 6 H 1.48500 * 109.47043 * 149.99860 * 3 2 1 7 7 C 1.38749 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99786 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.34309 * 116.99937 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00323 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00315 * 179.97438 * 10 9 7 13 13 C 1.52995 * 115.55227 * 179.91408 * 12 10 9 14 14 C 1.53002 * 117.50114 * 34.32408 * 13 12 10 15 15 C 1.53005 * 117.49430 * 325.66461 * 13 12 10 16 16 C 1.53001 * 117.49756 * 34.20094 * 12 10 9 17 17 C 1.52999 * 59.99986 * 252.51526 * 16 12 10 18 18 H 0.97007 * 119.99778 * 0.02562 * 1 2 3 19 19 H 1.09002 * 115.55101 * 179.97438 * 13 12 10 20 20 H 1.08998 * 117.49383 * 0.02562 * 14 13 12 21 21 H 1.08998 * 117.49594 * 145.02625 * 14 13 12 22 22 H 1.09005 * 117.49358 * 214.98095 * 15 13 12 23 23 H 1.08997 * 117.50425 * 359.97438 * 15 13 12 24 24 H 1.09004 * 117.49834 * 0.02562 * 16 12 10 25 25 H 1.08997 * 117.49999 * 145.02096 * 16 12 10 26 26 H 1.09004 * 117.50109 * 252.51157 * 17 16 12 27 27 H 1.08998 * 117.52032 * 107.48340 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6527 0.7001 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0001 9 8 1.3335 -2.3700 -0.0005 10 6 2.0650 -3.4964 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 0.0000 13 6 2.3112 -6.0539 -0.0021 14 6 3.6319 -5.9336 0.7610 15 6 3.6291 -5.9328 -0.7698 16 6 0.0597 -4.9593 -0.7623 17 6 0.0629 -4.9602 0.7677 18 1 -0.4850 0.8401 -0.0004 19 1 1.8163 -7.0251 -0.0012 20 1 3.8377 -4.9892 1.2648 21 1 4.0060 -6.8258 1.2630 22 1 4.0015 -6.8246 -1.2741 23 1 3.8332 -4.9881 -1.2737 24 1 -0.3144 -4.0672 -1.2646 25 1 -0.1468 -5.9037 -1.2657 26 1 -0.1415 -5.9053 1.2709 27 1 -0.3091 -4.0687 1.2726 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885732921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:35 Heat of formation + Delta-G solvation = -28.066876 kcal Electronic energy + Delta-G solvation = -12442.622528 eV Core-core repulsion = 10167.815783 eV Total energy + Delta-G solvation = -2274.806745 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62609 -37.24410 -35.28539 -34.32742 -32.05908 -25.75413 -24.02508 -22.25240 -21.87042 -21.54588 -18.81783 -17.67587 -16.16443 -15.14420 -15.08519 -14.35434 -14.26180 -13.84058 -12.98695 -12.35456 -11.80170 -11.49693 -11.43925 -11.13093 -10.93181 -10.90424 -10.42645 -10.38495 -10.17401 -9.84992 -9.58183 -8.94896 -8.72396 -8.55053 -6.39540 -4.06683 3.08316 3.19746 3.25565 3.35326 3.94438 4.14105 4.55800 4.68459 4.87606 5.15542 5.15775 5.41932 5.49491 5.73152 5.78616 6.02915 6.07872 6.14303 6.28063 6.47262 6.64377 6.65217 6.88851 6.99068 7.42927 7.98208 8.76104 9.09805 9.90711 10.78649 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.051032 B = 0.010911 C = 0.009432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.548409 B = 2565.642484 C = 2967.911055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.380 4.380 8 H 0.095 0.905 9 O -0.212 6.212 10 C 0.432 3.568 11 O -0.548 6.548 12 C -0.096 4.096 13 C -0.113 4.113 14 C -0.169 4.169 15 C -0.169 4.169 16 C -0.151 4.151 17 C -0.151 4.151 18 H 0.269 0.731 19 H 0.106 0.894 20 H 0.110 0.890 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -8.516 0.007 8.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.457 4.457 8 H 0.112 0.888 9 O -0.119 6.119 10 C 0.279 3.721 11 O -0.445 6.445 12 C -0.097 4.097 13 C -0.131 4.131 14 C -0.206 4.206 15 C -0.206 4.206 16 C -0.188 4.188 17 C -0.188 4.188 18 H 0.079 0.921 19 H 0.124 0.876 20 H 0.129 0.871 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.817 -8.315 0.013 8.355 hybrid contribution 0.398 0.756 -0.009 0.855 sum 1.215 -7.559 0.004 7.656 Atomic orbital electron populations 1.69994 1.05954 1.27592 1.46778 1.25311 0.95810 0.98785 0.96301 0.85688 0.79044 0.79850 0.78697 1.19924 1.20358 1.19148 1.21212 0.92355 0.79837 1.52252 0.88758 1.83829 1.39293 1.13165 1.75588 1.21975 0.86039 0.85832 0.78216 1.90480 1.15373 1.87606 1.51069 1.20322 0.89102 0.91215 1.09063 1.21352 0.88820 0.95314 1.07647 1.23050 0.99391 1.03168 0.95002 1.23048 0.99438 1.03161 0.94956 1.23020 0.97385 1.03644 0.94779 1.23020 0.97441 1.03638 0.94735 0.92145 0.87628 0.87147 0.90091 0.90092 0.87161 0.87371 0.88581 0.88580 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.43 13.67 55.48 0.76 -24.67 15 2 C 0.04 1.18 5.49 -17.53 -0.10 1.09 15 3 Si 0.94 21.50 29.55 -169.99 -5.02 16.48 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.38 -11.34 9.64 30.92 0.30 -11.04 15 8 H 0.09 2.83 6.86 -52.49 -0.36 2.47 15 9 O -0.21 -6.10 9.21 -20.69 -0.19 -6.29 15 10 C 0.43 10.94 7.27 36.01 0.26 11.20 15 11 O -0.55 -14.56 11.07 -19.05 -0.21 -14.77 15 12 C -0.10 -1.88 2.47 -155.66 -0.38 -2.27 15 13 C -0.11 -1.91 5.85 -90.62 -0.53 -2.44 15 14 C -0.17 -2.92 9.66 -26.69 -0.26 -3.18 15 15 C -0.17 -2.92 9.66 -26.69 -0.26 -3.17 15 16 C -0.15 -2.59 9.81 -26.73 -0.26 -2.86 15 17 C -0.15 -2.60 9.81 -26.73 -0.26 -2.86 15 18 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 19 H 0.11 1.47 8.14 -51.93 -0.42 1.05 15 20 H 0.11 2.26 6.28 -51.93 -0.33 1.93 15 21 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.11 2.25 6.28 -51.93 -0.33 1.92 15 24 H 0.11 2.07 8.07 -51.93 -0.42 1.65 15 25 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.10 1.33 8.14 -51.93 -0.42 0.91 15 27 H 0.11 2.07 8.07 -51.93 -0.42 1.65 15 LS Contribution 239.06 15.07 3.60 3.60 Total: -1.00 -31.65 239.06 -5.65 -37.30 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.10 Total: 3.88 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.49 Total: -15.53 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.40 Total: -21.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.65 -5.65 -37.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885732921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.232 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds