Wall clock time and date at job start Sun Mar 29 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99692 * 2 1 4 4 C 1.53007 * 109.47134 * 125.00078 * 3 2 1 5 5 H 1.09002 * 112.74126 * 294.23187 * 4 3 2 6 6 C 1.53511 * 113.47847 * 163.38173 * 4 3 2 7 7 C 1.53508 * 83.57476 * 219.21175 * 6 4 3 8 8 N 1.47474 * 87.93308 * 26.02390 * 7 6 4 9 9 C 1.46902 * 110.99954 * 221.29751 * 8 7 6 10 10 C 1.52997 * 109.47411 * 265.97022 * 9 8 7 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 H 1.08011 * 119.99668 * 179.97438 * 1 2 3 20 20 H 1.08000 * 120.00429 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.00866 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47553 * 5.00232 * 3 2 1 23 23 H 1.09001 * 109.47351 * 245.00093 * 3 2 1 24 24 H 1.09004 * 114.16676 * 332.86156 * 6 4 3 25 25 H 1.08996 * 114.17085 * 105.37054 * 6 4 3 26 26 H 1.09007 * 113.47150 * 271.25613 * 7 6 4 27 27 H 1.09000 * 113.47670 * 140.79485 * 7 6 4 28 28 H 1.09003 * 109.47595 * 145.96965 * 9 8 7 29 29 H 1.08999 * 109.47491 * 25.97214 * 9 8 7 30 30 H 1.09005 * 109.46800 * 60.00408 * 10 9 8 31 31 H 1.08998 * 109.47382 * 300.00207 * 10 9 8 32 32 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 2.5261 1.3400 2.1456 6 6 4.1216 2.4101 1.0546 7 6 5.0261 1.3230 1.6518 8 7 4.1030 0.3205 1.0882 9 6 3.8731 -0.7762 2.0382 10 6 4.8486 -1.9178 1.7451 11 6 4.6132 -3.0426 2.7200 12 1 3.8449 -2.9521 3.4737 13 6 5.3794 -4.1868 2.6507 14 7 6.3153 -4.2968 1.7333 15 14 5.0881 -5.5807 3.8596 16 1 6.0348 -6.6887 3.5750 17 1 5.3031 -5.0884 5.2439 18 1 3.6941 -6.0734 3.7204 19 1 -0.5400 -0.9354 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 1.8501 -0.9352 -0.0004 22 1 1.3585 2.1317 0.0896 23 1 2.6212 1.4027 -0.9314 24 1 4.3655 2.6788 0.0268 25 1 3.9710 3.2745 1.7012 26 1 5.0493 1.3279 2.7416 27 1 6.0215 1.2945 1.2085 28 1 2.8498 -1.1375 1.9355 29 1 4.0307 -0.4156 3.0546 30 1 5.8719 -1.5566 1.8480 31 1 4.6910 -2.2786 0.7287 32 1 6.8546 -5.1016 1.6847 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934461423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:43 Heat of formation + Delta-G solvation = 39.264354 kcal Electronic energy + Delta-G solvation = -12191.473816 eV Core-core repulsion = 10153.138529 eV Total energy + Delta-G solvation = -2038.335287 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81368 -34.43076 -33.42887 -31.15248 -28.29190 -27.25042 -23.72091 -23.10271 -20.46354 -19.62198 -19.17113 -16.40654 -15.68562 -14.93225 -14.55313 -14.45724 -14.10272 -13.13603 -12.57852 -12.38636 -11.93340 -11.82793 -11.55448 -11.17394 -10.94791 -10.84920 -10.73771 -10.43594 -10.07919 -9.68495 -9.37995 -9.07191 -9.02851 -8.32136 -8.21968 -5.96796 -3.99665 2.54583 3.34314 3.38646 3.40974 4.39337 4.53587 4.73025 5.05878 5.30265 5.38622 5.43882 5.56423 5.67810 5.71309 5.82130 5.91224 6.02604 6.12024 6.20752 6.26965 6.32947 6.50472 6.84514 6.95258 7.05681 7.12634 7.55604 7.79060 7.92411 8.11441 8.45829 9.07770 9.63788 11.14457 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.008519 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.928287 B = 3285.810663 C = 3750.933705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 C -0.074 4.074 4 C 0.026 3.974 5 H 0.071 0.929 6 C -0.144 4.144 7 C 0.001 3.999 8 N -0.463 5.463 9 C 0.027 3.973 10 C 0.035 3.965 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.287 1.287 17 H -0.277 1.277 18 H -0.277 1.277 19 H 0.093 0.907 20 H 0.089 0.911 21 H 0.117 0.883 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 11.577 -1.571 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.152 4.152 3 C -0.112 4.112 4 C -0.084 4.084 5 H 0.089 0.911 6 C -0.182 4.182 7 C -0.128 4.128 8 N -0.186 5.186 9 C -0.100 4.100 10 C -0.003 4.003 11 C -0.562 4.562 12 H 0.070 0.930 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.212 1.212 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.112 0.888 20 H 0.108 0.892 21 H 0.135 0.865 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.617 11.077 -2.258 13.099 hybrid contribution -0.299 -0.699 1.575 1.749 sum -6.916 10.378 -0.683 12.489 Atomic orbital electron populations 1.23745 0.95967 1.01196 1.04275 1.23091 0.95687 0.99468 0.96976 1.20658 0.97086 0.94926 0.98496 1.23327 0.93648 0.93528 0.97873 0.91139 1.23242 0.96939 0.96186 1.01837 1.23690 0.98571 0.92127 0.98414 1.68967 1.04329 1.03499 1.41792 1.22895 1.01310 0.93606 0.92227 1.18938 0.93523 0.90602 0.97221 1.21183 1.18290 1.01044 1.15725 0.92957 1.24998 0.95190 0.98423 0.95692 1.69972 1.21442 1.28000 1.33777 0.86667 0.78016 0.81816 0.81551 1.21233 1.20310 1.20255 0.88844 0.89230 0.86535 0.91835 0.90400 0.89253 0.91427 0.91755 0.90107 0.92196 0.95261 0.96728 0.95923 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.82 14.32 29.02 0.42 -2.40 16 2 C -0.13 -2.01 8.78 -36.02 -0.32 -2.32 16 3 C -0.07 -1.00 5.71 -27.88 -0.16 -1.16 16 4 C 0.03 0.39 3.03 -71.44 -0.22 0.17 16 5 H 0.07 1.06 7.91 -51.93 -0.41 0.65 16 6 C -0.14 -1.86 8.01 -26.20 -0.21 -2.07 16 7 C 0.00 0.02 7.71 -7.56 -0.06 -0.04 16 8 N -0.46 -8.65 5.97 -236.53 -1.41 -10.06 16 9 C 0.03 0.59 4.67 -3.82 -0.02 0.58 16 10 C 0.03 0.94 5.30 -27.89 -0.15 0.79 16 11 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 15 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H 0.09 1.17 8.06 -52.48 -0.42 0.75 16 20 H 0.09 1.01 7.84 -52.49 -0.41 0.60 16 21 H 0.12 2.04 7.41 -52.49 -0.39 1.65 16 22 H 0.06 0.73 7.79 -51.93 -0.40 0.32 16 23 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 24 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.02 7.42 -51.92 -0.39 0.64 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.30 6.87 -51.93 -0.36 0.94 16 29 H 0.03 0.63 7.30 -51.93 -0.38 0.25 16 30 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 267.57 15.07 4.03 4.03 Total: -1.00 -30.49 267.57 -8.02 -38.51 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.23 Total: -2.39 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.12 Total: -20.37 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.68 Total: -36.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.49 -8.02 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934461423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.775 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds