Wall clock time and date at job start Sun Mar 29 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99692 * 2 1 4 4 C 1.53007 * 109.47134 * 125.00078 * 3 2 1 5 5 H 1.09002 * 112.74126 * 294.23187 * 4 3 2 6 6 C 1.53511 * 113.47847 * 163.38173 * 4 3 2 7 7 C 1.53508 * 83.57476 * 219.21175 * 6 4 3 8 8 N 1.47474 * 87.93308 * 26.02390 * 7 6 4 9 9 C 1.46902 * 110.99954 * 221.29751 * 8 7 6 10 10 C 1.52997 * 109.47411 * 265.97022 * 9 8 7 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 H 1.08011 * 119.99668 * 179.97438 * 1 2 3 20 20 H 1.08000 * 120.00429 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.00866 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.47553 * 5.00232 * 3 2 1 23 23 H 1.09001 * 109.47351 * 245.00093 * 3 2 1 24 24 H 1.09004 * 114.16676 * 332.86156 * 6 4 3 25 25 H 1.08996 * 114.17085 * 105.37054 * 6 4 3 26 26 H 1.09007 * 113.47150 * 271.25613 * 7 6 4 27 27 H 1.09000 * 113.47670 * 140.79485 * 7 6 4 28 28 H 1.09003 * 109.47595 * 145.96965 * 9 8 7 29 29 H 1.08999 * 109.47491 * 25.97214 * 9 8 7 30 30 H 1.09005 * 109.46800 * 60.00408 * 10 9 8 31 31 H 1.08998 * 109.47382 * 300.00207 * 10 9 8 32 32 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 2.5261 1.3400 2.1456 6 6 4.1216 2.4101 1.0546 7 6 5.0261 1.3230 1.6518 8 7 4.1030 0.3205 1.0882 9 6 3.8731 -0.7762 2.0382 10 6 4.8486 -1.9178 1.7451 11 6 4.6132 -3.0426 2.7200 12 1 3.8449 -2.9521 3.4737 13 6 5.3794 -4.1868 2.6507 14 7 6.3153 -4.2968 1.7333 15 14 5.0881 -5.5807 3.8596 16 1 6.0348 -6.6887 3.5750 17 1 5.3031 -5.0884 5.2439 18 1 3.6941 -6.0734 3.7204 19 1 -0.5400 -0.9354 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 1.8501 -0.9352 -0.0004 22 1 1.3585 2.1317 0.0896 23 1 2.6212 1.4027 -0.9314 24 1 4.3655 2.6788 0.0268 25 1 3.9710 3.2745 1.7012 26 1 5.0493 1.3279 2.7416 27 1 6.0215 1.2945 1.2085 28 1 2.8498 -1.1375 1.9355 29 1 4.0307 -0.4156 3.0546 30 1 5.8719 -1.5566 1.8480 31 1 4.6910 -2.2786 0.7287 32 1 6.8546 -5.1016 1.6847 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934461423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:43 Heat of formation + Delta-G solvation = 19.022884 kcal Electronic energy + Delta-G solvation = -12192.351552 eV Core-core repulsion = 10153.138529 eV Total energy + Delta-G solvation = -2039.213023 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12165 -35.78735 -35.32824 -33.06043 -29.55256 -28.92896 -25.68512 -24.28155 -22.35018 -20.79490 -20.35618 -18.57073 -16.99628 -16.55805 -16.38273 -15.84145 -15.37139 -14.66476 -14.33657 -13.83356 -13.50395 -13.25993 -12.97210 -12.86503 -12.66718 -12.39049 -12.23208 -12.05397 -11.54529 -11.40724 -11.16845 -11.04574 -10.58280 -10.18896 -9.64847 -8.22751 -6.35602 1.36888 1.40829 1.44964 1.48945 2.37733 3.09727 3.17486 3.56574 3.90897 4.15671 4.26045 4.35557 4.42679 4.49288 4.56711 4.61807 4.83072 4.85025 4.99923 5.04098 5.09484 5.17060 5.30878 5.39864 5.46539 5.74926 5.76821 5.83173 5.98079 6.15921 6.33157 6.81441 7.33829 8.89304 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.008519 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.928287 B = 3285.810663 C = 3750.933705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.067 4.067 4 C 0.025 3.975 5 H 0.074 0.926 6 C -0.117 4.117 7 C -0.010 4.010 8 N -0.491 5.491 9 C 0.048 3.952 10 C 0.044 3.956 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.280 1.280 17 H -0.265 1.265 18 H -0.266 1.266 19 H 0.094 0.906 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.031 0.969 30 H -0.015 1.015 31 H -0.014 1.014 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 12.777 -0.714 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.181 4.181 3 C -0.105 4.105 4 C -0.084 4.084 5 H 0.092 0.908 6 C -0.155 4.155 7 C -0.140 4.140 8 N -0.214 5.214 9 C -0.080 4.080 10 C 0.006 3.994 11 C -0.587 4.587 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.206 1.206 17 H -0.190 1.190 18 H -0.191 1.191 19 H 0.112 0.888 20 H 0.135 0.865 21 H 0.096 0.904 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.003 0.997 31 H 0.005 0.995 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.137 12.296 -1.402 14.811 hybrid contribution 0.158 -1.058 1.254 1.649 sum -7.980 11.238 -0.148 13.783 Atomic orbital electron populations 1.23960 0.95231 1.02574 1.01254 1.22978 0.96474 0.98813 0.99877 1.20651 0.97162 0.95047 0.97623 1.23450 0.93683 0.92558 0.98747 0.90839 1.23164 0.93719 0.95771 1.02808 1.23817 0.98499 0.93009 0.98626 1.68919 1.07225 1.04126 1.41127 1.22490 0.99237 0.93257 0.93036 1.18754 0.93313 0.92352 0.94943 1.21612 1.18691 1.02058 1.16303 0.92258 1.26024 0.94627 1.01476 0.97679 1.70121 1.22406 1.29020 1.35649 0.85455 0.78362 0.77913 0.79046 1.20563 1.18981 1.19120 0.88761 0.86452 0.90401 0.88651 0.90756 0.88163 0.88215 0.91675 0.90968 0.92537 0.95075 0.99676 0.99511 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 14.32 67.79 0.97 -3.70 16 2 C -0.16 -4.78 8.78 25.65 0.23 -4.55 16 3 C -0.07 -1.69 5.71 29.85 0.17 -1.52 16 4 C 0.02 0.70 3.03 42.18 0.13 0.83 16 5 H 0.07 2.05 7.91 -2.39 -0.02 2.03 16 6 C -0.12 -2.70 8.01 30.94 0.25 -2.45 16 7 C -0.01 -0.33 7.71 83.57 0.64 0.31 16 8 N -0.49 -18.56 5.97 -902.23 -5.39 -23.94 16 9 C 0.05 2.16 4.67 86.30 0.40 2.56 16 10 C 0.04 2.50 5.30 29.85 0.16 2.65 16 11 C -0.55 -32.67 9.11 25.60 0.23 -32.43 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 13 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 14 N -0.93 -58.89 13.29 21.45 0.28 -58.60 16 15 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H 0.09 2.22 8.06 -2.90 -0.02 2.20 16 20 H 0.12 2.20 7.84 -2.91 -0.02 2.17 16 21 H 0.08 2.87 7.41 -2.91 -0.02 2.85 16 22 H 0.10 1.80 7.79 -2.39 -0.02 1.78 16 23 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 24 H 0.10 2.13 8.07 -2.38 -0.02 2.11 16 25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.04 7.42 -2.38 -0.02 2.02 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.53 6.87 -2.39 -0.02 2.51 16 29 H 0.03 1.36 7.30 -2.39 -0.02 1.34 16 30 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 31 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -67.74 267.57 1.62 -66.12 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.05 Total: 6.86 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.64 Total: -37.84 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -5.10 Total: -82.54 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.74 1.62 -66.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934461423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.143 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds