Wall clock time and date at job start Sun Mar 29 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86807 * 119.99656 * 2 1 4 4 H 1.48503 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47225 * 299.99931 * 3 2 1 6 6 H 1.48498 * 109.46933 * 60.00400 * 3 2 1 7 7 C 1.39007 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.37568 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.36671 * 126.88654 * 179.97438 * 9 7 2 11 11 C 1.34950 * 106.72691 * 180.23204 * 10 9 7 12 12 C 1.50700 * 125.48418 * 179.74349 * 11 10 9 13 13 C 1.52999 * 109.47142 * 124.99774 * 12 11 10 14 14 C 1.52999 * 109.47110 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.47311 * 179.97438 * 14 13 12 16 16 N 1.33453 * 109.02493 * 359.56683 * 11 10 9 17 17 N 1.28761 * 109.99122 * 0.44963 * 16 11 10 18 18 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 19 19 H 1.08002 * 126.63309 * 359.96283 * 10 9 7 20 20 H 1.09006 * 109.46690 * 244.99046 * 12 11 10 21 21 H 1.08994 * 109.47226 * 4.99171 * 12 11 10 22 22 H 1.09006 * 109.46734 * 299.99245 * 13 12 11 23 23 H 1.08994 * 109.47552 * 59.99596 * 13 12 11 24 24 H 1.09003 * 109.47182 * 299.99890 * 14 13 12 25 25 H 1.09004 * 109.46989 * 59.99515 * 14 13 12 26 26 H 1.00900 * 111.00158 * 179.97438 * 15 14 13 27 27 H 1.00900 * 110.99678 * 303.95556 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 3.7064 1.3465 0.0006 5 1 1.8877 2.3965 -1.2125 6 1 1.8877 2.3964 1.2125 7 6 2.0076 -1.2038 0.0005 8 1 3.0876 -1.2038 0.0001 9 7 1.3198 -2.3952 0.0016 10 6 1.8564 -3.6522 0.0018 11 6 0.8203 -4.5168 -0.0023 12 6 0.9348 -6.0194 -0.0092 13 6 0.1485 -6.5962 1.1698 14 6 0.2643 -8.1218 1.1624 15 7 -0.4901 -8.6756 2.2947 16 7 -0.3221 -3.8269 0.0047 17 7 -0.0733 -2.5635 0.0035 18 1 -0.4851 0.8400 -0.0004 19 1 2.9065 -3.9046 0.0005 20 1 0.5293 -6.4104 -0.9424 21 1 1.9832 -6.3043 0.0790 22 1 0.5541 -6.2052 2.1030 23 1 -0.8998 -6.3113 1.0816 24 1 -0.1414 -8.5125 0.2292 25 1 1.3127 -8.4070 1.2504 26 1 -0.4295 -9.6827 2.3117 27 1 -0.1751 -8.2793 3.1675 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119273665.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:52 Heat of formation + Delta-G solvation = 72.963396 kcal Electronic energy + Delta-G solvation = -11850.139028 eV Core-core repulsion = 9644.298787 eV Total energy + Delta-G solvation = -2205.840241 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03270 -35.79044 -34.09054 -32.05330 -31.12557 -28.20803 -25.74557 -23.94119 -21.46179 -20.80009 -19.51679 -17.37403 -15.71094 -15.51324 -14.95489 -14.52225 -13.97296 -13.66176 -13.13616 -12.85475 -12.12876 -11.83148 -11.45085 -11.39428 -11.17413 -10.86586 -10.56309 -10.32383 -9.84645 -9.50875 -9.10208 -8.65402 -8.61017 -7.31275 -6.78773 -4.58671 2.83803 2.96773 3.03770 3.37224 3.70853 4.15459 4.67209 4.74695 4.84399 5.33907 5.43128 5.77556 5.82783 6.13286 6.21383 6.29308 6.39982 6.62670 6.79350 6.87646 7.04068 7.19135 7.22272 7.48725 7.86642 7.95358 8.55349 9.17150 10.18468 10.27804 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.098250 B = 0.007012 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.919704 B = 3992.456549 C = 4098.858130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.046 3.954 3 Si 0.942 3.058 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.316 4.316 8 H 0.120 0.880 9 N -0.151 5.151 10 C -0.119 4.119 11 C -0.074 4.074 12 C -0.013 4.013 13 C -0.109 4.109 14 C 0.061 3.939 15 N -0.853 5.853 16 N -0.326 5.326 17 N -0.094 5.094 18 H 0.281 0.719 19 H 0.153 0.847 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.022 0.978 26 H 0.335 0.665 27 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -7.123 1.801 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.173 4.173 3 Si 0.765 3.235 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.453 4.453 8 H 0.138 0.862 9 N 0.078 4.922 10 C -0.273 4.273 11 C -0.221 4.221 12 C -0.054 4.054 13 C -0.147 4.147 14 C -0.070 4.070 15 N -0.382 5.382 16 N -0.186 5.186 17 N -0.071 5.071 18 H 0.092 0.908 19 H 0.171 0.829 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.147 0.853 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.863 -5.957 1.446 6.765 hybrid contribution 2.528 0.040 0.320 2.549 sum 5.391 -5.917 1.766 8.197 Atomic orbital electron populations 1.70156 1.06400 1.28890 1.33281 1.25779 0.95792 1.00798 0.94945 0.85647 0.79663 0.79473 0.78731 1.18429 1.19604 1.19606 1.20167 0.92176 0.80645 1.52263 0.86242 1.46714 1.06949 1.04503 1.34050 1.22342 0.98925 0.85271 1.20715 1.20719 0.89464 0.95490 1.16414 1.19504 0.98938 0.89336 0.97575 1.21498 1.02289 0.92315 0.98600 1.21885 0.94587 0.96328 0.94187 1.58696 1.62652 1.10351 1.06512 1.73987 1.25368 1.00753 1.18494 1.82535 0.88759 1.06970 1.28817 0.90791 0.82949 0.92212 0.92212 0.92683 0.90542 0.91238 0.96002 0.85319 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.00 11.89 55.49 0.66 -20.34 15 2 C 0.05 1.17 5.50 -17.52 -0.10 1.08 15 3 Si 0.94 18.40 29.55 -169.99 -5.02 13.38 15 4 H -0.26 -4.83 7.11 56.52 0.40 -4.42 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.32 -8.33 10.31 -14.69 -0.15 -8.48 15 8 H 0.12 2.79 7.83 -52.49 -0.41 2.38 15 9 N -0.15 -4.23 3.78 -11.47 -0.04 -4.27 15 10 C -0.12 -2.90 11.45 -16.56 -0.19 -3.09 15 11 C -0.07 -1.77 6.38 -83.06 -0.53 -2.30 15 12 C -0.01 -0.24 5.77 -27.88 -0.16 -0.40 15 13 C -0.11 -1.83 5.43 -26.73 -0.15 -1.97 15 14 C 0.06 0.80 6.79 -3.82 -0.03 0.77 15 15 N -0.85 -10.35 9.62 -10.37 -0.10 -10.45 15 16 N -0.33 -9.13 12.29 33.16 0.41 -8.72 15 17 N -0.09 -2.85 11.73 60.35 0.71 -2.14 15 18 H 0.28 6.99 8.31 -40.82 -0.34 6.65 15 19 H 0.15 3.11 8.06 -52.49 -0.42 2.68 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 21 H 0.06 0.93 8.10 -51.93 -0.42 0.51 15 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 15 26 H 0.34 3.20 9.08 -39.29 -0.36 2.85 15 27 H 0.34 3.81 8.99 -39.29 -0.35 3.45 15 LS Contribution 242.88 15.07 3.66 3.66 Total: -1.00 -32.07 242.88 -4.24 -36.31 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.21 Total: 6.96 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.30 Total: -14.39 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 1.63 Total: -45.92 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.07 -4.24 -36.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119273665.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.274 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds