Wall clock time and date at job start Sun Mar 29 2020 21:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47544 * 2 1 4 4 H 1.08994 * 109.47528 * 305.00224 * 3 2 1 5 5 N 1.46901 * 109.46792 * 64.99917 * 3 2 1 6 6 C 1.50699 * 109.47212 * 184.99829 * 3 2 1 7 7 C 1.34950 * 125.48633 * 124.98661 * 6 3 2 8 8 N 1.36665 * 106.72919 * 180.02562 * 7 6 3 9 9 C 1.37571 * 126.88629 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99899 * 0.02562 * 9 8 7 11 11 C 1.39005 * 119.99894 * 179.97438 * 9 8 7 12 12 N 1.31248 * 120.00243 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99924 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46974 * 59.99939 * 13 11 9 15 15 H 1.48500 * 109.47287 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47016 * 300.00156 * 13 11 9 17 17 N 1.40320 * 106.22842 * 0.02562 * 8 7 6 18 18 N 1.28764 * 108.03167 * 359.97438 * 17 8 7 19 19 H 1.09002 * 109.47138 * 300.00029 * 1 2 3 20 20 H 1.09005 * 109.47067 * 59.99726 * 1 2 3 21 21 H 1.08995 * 109.47566 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47138 * 239.99971 * 2 1 3 23 23 H 1.09004 * 109.47066 * 120.00827 * 2 1 3 24 24 H 1.00896 * 111.00193 * 296.04694 * 5 3 2 25 25 H 1.00908 * 110.99672 * 60.00631 * 5 3 2 26 26 H 1.08008 * 126.63433 * 0.06002 * 7 6 3 27 27 H 0.97000 * 119.99880 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 7 1.6514 2.0992 1.2553 6 6 3.5419 1.4441 -0.1238 7 6 4.2495 2.1010 -1.0667 8 7 5.5685 1.8396 -0.8220 9 6 6.6487 2.3046 -1.5358 10 1 6.4952 2.9483 -2.3894 11 6 7.9376 1.9468 -1.1579 12 7 8.1241 1.1650 -0.1203 13 14 9.4044 2.5787 -2.1267 14 1 9.4190 4.0633 -2.0907 15 1 10.6574 2.0561 -1.5251 16 1 9.3027 2.1187 -3.5351 17 7 5.6000 1.0020 0.3033 18 7 4.3864 0.7956 0.6808 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5140 0.8899 24 1 0.6477 2.1683 1.3315 25 1 2.0423 1.6178 2.0513 26 1 3.8507 2.7149 -1.8607 27 1 9.0235 0.9150 0.1432 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119326815.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:02 Heat of formation + Delta-G solvation = 76.470295 kcal Electronic energy + Delta-G solvation = -12154.940984 eV Core-core repulsion = 9949.252813 eV Total energy + Delta-G solvation = -2205.688171 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.05825 -36.16458 -33.91991 -31.22171 -30.42413 -28.86066 -25.85488 -24.34807 -21.55273 -20.68913 -19.45335 -17.30231 -15.57481 -15.48224 -14.54479 -14.13744 -14.06560 -13.50427 -13.11853 -12.87199 -12.03595 -11.87749 -11.46869 -11.37055 -11.21440 -10.91928 -10.57689 -10.52885 -9.88637 -9.48788 -9.15417 -8.64094 -8.15625 -7.32263 -6.76992 -4.56899 2.87383 2.97932 3.02653 3.38939 3.72824 4.13110 4.70493 4.86073 5.30893 5.35714 5.41922 5.47667 5.91303 6.04081 6.05155 6.23532 6.36404 6.48244 6.65250 6.81613 7.02066 7.19373 7.68031 7.87994 7.95246 8.03012 8.56813 9.18647 10.20129 10.28087 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.089523 B = 0.008217 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.694497 B = 3406.619129 C = 3483.738239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.151 4.151 3 C 0.193 3.807 4 H 0.077 0.923 5 N -0.839 5.839 6 C -0.062 4.062 7 C -0.110 4.110 8 N -0.149 5.149 9 C -0.316 4.316 10 H 0.119 0.881 11 C 0.047 3.953 12 N -0.762 5.762 13 Si 0.942 3.058 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.264 1.264 17 N -0.094 5.094 18 N -0.325 5.325 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.328 0.672 25 H 0.343 0.657 26 H 0.153 0.847 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 0.867 -2.779 7.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C 0.079 3.921 4 H 0.095 0.905 5 N -0.369 5.369 6 C -0.210 4.210 7 C -0.264 4.264 8 N 0.080 4.920 9 C -0.453 4.453 10 H 0.137 0.863 11 C -0.172 4.172 12 N -0.389 5.389 13 Si 0.765 3.235 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.189 1.189 17 N -0.071 5.071 18 N -0.185 5.185 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.140 0.860 25 H 0.156 0.844 26 H 0.171 0.829 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.574 0.544 -1.845 5.897 hybrid contribution -0.300 0.022 -1.086 1.127 sum -5.875 0.566 -2.931 6.590 Atomic orbital electron populations 1.21820 0.96674 1.01189 1.01235 1.22277 0.94524 0.99328 1.02989 1.19339 0.89282 0.91220 0.92218 0.90526 1.58916 1.14303 1.58973 1.04662 1.20475 0.94792 1.06695 0.99022 1.22293 0.84853 1.12369 1.06932 1.46656 1.04027 1.24493 1.16857 1.20076 0.83146 1.30409 1.11655 0.86326 1.25760 0.99799 0.95403 0.96236 1.70137 1.24073 1.24663 1.20008 0.85775 0.78666 0.79606 0.79490 1.18851 1.19884 1.18890 1.82521 1.10260 1.13903 1.00372 1.73931 0.98396 1.21542 1.24657 0.93186 0.92876 0.93105 0.91840 0.91575 0.85989 0.84369 0.82950 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.68 37.16 0.36 -1.51 15 2 C -0.15 -2.46 5.54 -26.74 -0.15 -2.60 15 3 C 0.19 3.52 3.28 -68.87 -0.23 3.29 15 4 H 0.08 1.29 8.10 -51.93 -0.42 0.87 15 5 N -0.84 -14.16 9.17 -5.66 -0.05 -14.21 15 6 C -0.06 -1.49 5.92 -83.06 -0.49 -1.98 15 7 C -0.11 -2.71 11.45 -16.57 -0.19 -2.90 15 8 N -0.15 -4.18 3.78 -11.47 -0.04 -4.22 15 9 C -0.32 -8.36 10.31 -14.69 -0.15 -8.51 15 10 H 0.12 2.77 7.83 -52.48 -0.41 2.36 15 11 C 0.05 1.20 5.50 -17.52 -0.10 1.11 15 12 N -0.76 -21.02 11.89 55.49 0.66 -20.37 15 13 Si 0.94 18.47 29.55 -169.99 -5.02 13.44 15 14 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 16 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 17 N -0.09 -2.81 11.73 60.35 0.71 -2.10 15 18 N -0.33 -8.89 12.29 33.16 0.41 -8.48 15 19 H 0.05 0.56 6.87 -51.93 -0.36 0.20 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.33 4.41 7.55 -39.29 -0.30 4.11 15 25 H 0.34 6.06 8.99 -39.29 -0.35 5.70 15 26 H 0.15 3.18 8.06 -52.48 -0.42 2.76 15 27 H 0.28 7.04 8.31 -40.82 -0.34 6.71 15 LS Contribution 239.67 15.07 3.61 3.61 Total: -1.00 -31.35 239.67 -3.76 -35.11 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -3.09 Total: 10.32 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -0.94 Total: -13.10 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 1.68 Total: -49.38 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.35 -3.76 -35.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119326815.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.579 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds