Wall clock time and date at job start Sun Mar 29 2020 21:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00259 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38759 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36864 * 119.99558 * 0.27477 * 7 2 1 10 10 C 1.39035 * 119.99521 * 179.72330 * 9 7 2 11 11 N 1.32442 * 119.64403 * 359.72238 * 10 9 7 12 12 C 1.31859 * 121.71385 * 179.75159 * 11 10 9 13 13 C 1.38855 * 120.80300 * 0.53063 * 12 11 10 14 14 N 1.39827 * 120.39262 * 179.76664 * 13 12 11 15 15 C 1.39407 * 119.21268 * 359.73952 * 13 12 11 16 16 C 1.38433 * 118.42911 * 0.02562 * 15 13 12 17 17 F 1.35108 * 120.43822 * 180.02562 * 16 15 13 18 18 H 0.96991 * 119.99945 * 359.97438 * 1 2 3 19 19 H 0.97000 * 120.00550 * 359.72571 * 9 7 2 20 20 H 1.07996 * 119.59573 * 180.27248 * 12 11 10 21 21 H 0.97003 * 120.00127 * 179.97438 * 14 13 12 22 22 H 0.96999 * 119.99818 * 359.97092 * 14 13 12 23 23 H 1.08004 * 120.78714 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0100 -1.2016 -0.0005 8 1 3.0900 -1.2016 -0.0010 9 7 1.3257 -2.3869 -0.0068 10 6 2.0209 -3.5909 -0.0131 11 7 3.3453 -3.5826 -0.0187 12 6 4.0455 -4.6999 -0.0199 13 6 3.4125 -5.9357 -0.0265 14 7 4.1635 -7.1152 -0.0327 15 6 2.0194 -5.9866 -0.0262 16 6 1.3163 -4.7941 -0.0199 17 9 -0.0347 -4.7960 -0.0189 18 1 -0.4849 0.8400 0.0004 19 1 0.3557 -2.3870 -0.0068 20 1 5.1245 -4.6532 -0.0201 21 1 3.7154 -7.9755 -0.0369 22 1 5.1326 -7.0731 -0.0329 23 1 1.5008 -6.9340 -0.0308 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181812.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:16 Heat of formation + Delta-G solvation = -5.591869 kcal Electronic energy + Delta-G solvation = -11888.730558 eV Core-core repulsion = 9458.304937 eV Total energy + Delta-G solvation = -2430.425620 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.84654 -39.01203 -35.64833 -33.57143 -31.42919 -30.49404 -27.12005 -24.62931 -22.58315 -21.32089 -18.17410 -16.97102 -16.75117 -16.34502 -14.82080 -14.77762 -14.62968 -14.25619 -13.47180 -13.38496 -12.84672 -12.10580 -11.78794 -11.48751 -11.37339 -10.92293 -10.45668 -10.23100 -9.63982 -8.58968 -8.53451 -8.25402 -6.48435 -6.38205 -3.62521 2.02277 2.41265 3.22612 3.23699 3.28986 4.11021 4.42438 4.64532 4.91084 5.27682 5.29066 5.54586 5.59041 6.14460 6.46494 6.62698 6.74015 7.29161 7.52420 7.86134 8.09649 8.30439 8.72620 8.98184 9.34217 9.72848 10.68163 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.054697 B = 0.010087 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.791380 B = 2775.187658 C = 3277.132845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.012 3.988 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.277 4.277 8 H 0.113 0.887 9 N -0.536 5.536 10 C 0.314 3.686 11 N -0.502 5.502 12 C 0.096 3.904 13 C 0.047 3.953 14 N -0.888 5.888 15 C -0.123 4.123 16 C -0.040 4.040 17 F -0.150 7.150 18 H 0.274 0.726 19 H 0.408 0.592 20 H 0.140 0.860 21 H 0.387 0.613 22 H 0.390 0.610 23 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -8.506 -0.025 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.408 4.408 8 H 0.130 0.870 9 N -0.145 5.145 10 C 0.070 3.930 11 N -0.221 5.221 12 C -0.070 4.070 13 C -0.059 4.059 14 N -0.434 5.434 15 C -0.153 4.153 16 C -0.070 4.070 17 F -0.129 7.129 18 H 0.084 0.916 19 H 0.245 0.755 20 H 0.157 0.843 21 H 0.213 0.787 22 H 0.217 0.783 23 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.284 -7.090 -0.019 8.842 hybrid contribution -0.583 -0.387 -0.018 0.700 sum 4.700 -7.477 -0.037 8.831 Atomic orbital electron populations 1.69709 1.06010 1.28478 1.49198 1.25381 0.95779 1.00037 0.97853 0.85744 0.79114 0.80375 0.78440 1.20344 1.20885 1.19241 1.19915 0.93720 0.81924 1.45263 0.86958 1.40814 1.08058 1.01491 1.64178 1.18154 0.88463 0.85464 1.00906 1.67177 1.05178 1.29086 1.20671 1.21834 0.98723 0.85963 1.00502 1.17929 0.90197 0.88034 1.09744 1.41810 1.07331 1.04405 1.89845 1.20406 0.92603 0.96395 1.05895 1.17497 0.76780 0.93568 1.19184 1.91359 1.29079 1.97258 1.95230 0.91613 0.75488 0.84299 0.78694 0.78348 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 13.05 55.49 0.72 -24.25 14 2 C 0.01 0.33 5.50 -17.45 -0.10 0.23 14 3 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 14 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 14 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 7 C -0.28 -7.63 9.70 -15.11 -0.15 -7.78 14 8 H 0.11 3.08 7.07 -52.49 -0.37 2.71 14 9 N -0.54 -14.33 5.42 -11.09 -0.06 -14.39 14 10 C 0.31 7.71 7.44 -154.84 -1.15 6.56 14 11 N -0.50 -11.68 9.08 -12.16 -0.11 -11.79 14 12 C 0.10 1.82 11.05 -17.31 -0.19 1.63 14 13 C 0.05 0.81 6.79 -83.55 -0.57 0.24 14 14 N -0.89 -11.02 9.10 32.53 0.30 -10.72 14 15 C -0.12 -2.28 10.02 -39.07 -0.39 -2.67 14 16 C -0.04 -0.88 7.35 -39.07 -0.29 -1.16 14 17 F -0.15 -3.33 16.64 2.25 0.04 -3.30 14 18 H 0.27 7.18 8.31 -40.82 -0.34 6.84 14 19 H 0.41 11.10 7.35 -40.82 -0.30 10.80 14 20 H 0.14 2.16 8.06 -52.49 -0.42 1.74 14 21 H 0.39 4.04 8.86 -40.82 -0.36 3.68 14 22 H 0.39 3.96 8.85 -40.82 -0.36 3.59 14 23 H 0.12 1.93 8.06 -52.48 -0.42 1.51 14 LS Contribution 218.57 15.07 3.29 3.29 Total: -1.00 -29.34 218.57 -5.05 -34.39 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -1.37 Total: 13.90 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.83 Total: -2.96 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.85 Total: -61.14 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -29.34 -5.05 -34.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181812.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.794 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds