Wall clock time and date at job start Sun Mar 29 2020 21:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00259 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38759 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36864 * 119.99558 * 0.27477 * 7 2 1 10 10 C 1.39035 * 119.99521 * 179.72330 * 9 7 2 11 11 N 1.32442 * 119.64403 * 359.72238 * 10 9 7 12 12 C 1.31859 * 121.71385 * 179.75159 * 11 10 9 13 13 C 1.38855 * 120.80300 * 0.53063 * 12 11 10 14 14 N 1.39827 * 120.39262 * 179.76664 * 13 12 11 15 15 C 1.39407 * 119.21268 * 359.73952 * 13 12 11 16 16 C 1.38433 * 118.42911 * 0.02562 * 15 13 12 17 17 F 1.35108 * 120.43822 * 180.02562 * 16 15 13 18 18 H 0.96991 * 119.99945 * 359.97438 * 1 2 3 19 19 H 0.97000 * 120.00550 * 359.72571 * 9 7 2 20 20 H 1.07996 * 119.59573 * 180.27248 * 12 11 10 21 21 H 0.97003 * 120.00127 * 179.97438 * 14 13 12 22 22 H 0.96999 * 119.99818 * 359.97092 * 14 13 12 23 23 H 1.08004 * 120.78714 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0100 -1.2016 -0.0005 8 1 3.0900 -1.2016 -0.0010 9 7 1.3257 -2.3869 -0.0068 10 6 2.0209 -3.5909 -0.0131 11 7 3.3453 -3.5826 -0.0187 12 6 4.0455 -4.6999 -0.0199 13 6 3.4125 -5.9357 -0.0265 14 7 4.1635 -7.1152 -0.0327 15 6 2.0194 -5.9866 -0.0262 16 6 1.3163 -4.7941 -0.0199 17 9 -0.0347 -4.7960 -0.0189 18 1 -0.4849 0.8400 0.0004 19 1 0.3557 -2.3870 -0.0068 20 1 5.1245 -4.6532 -0.0201 21 1 3.7154 -7.9755 -0.0369 22 1 5.1326 -7.0731 -0.0329 23 1 1.5008 -6.9340 -0.0308 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181812.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:16 Heat of formation + Delta-G solvation = -26.942291 kcal Electronic energy + Delta-G solvation = -11889.656381 eV Core-core repulsion = 9458.304937 eV Total energy + Delta-G solvation = -2431.351444 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.58123 -40.69442 -37.35238 -35.17313 -33.25041 -32.09917 -28.77305 -26.45377 -24.26089 -22.97610 -19.99825 -18.65684 -18.32439 -17.97720 -16.56111 -16.37166 -16.24520 -15.79168 -15.26175 -15.06534 -14.56817 -13.72439 -13.49721 -13.19080 -13.10758 -12.56018 -12.33237 -12.04243 -11.35393 -10.38649 -10.23395 -9.85673 -8.40103 -7.97519 -5.62501 0.38441 0.78790 1.43078 1.50209 1.57601 2.32202 2.90445 3.00948 3.30282 3.38371 3.61732 4.01878 4.10617 4.49654 4.94269 5.01025 5.17414 5.42529 5.71094 6.04551 6.73984 6.83889 7.15643 7.30883 7.49338 7.86716 8.78921 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.054697 B = 0.010087 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.791380 B = 2775.187658 C = 3277.132845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.041 4.041 3 Si 1.003 2.997 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.295 4.295 8 H 0.104 0.896 9 N -0.575 5.575 10 C 0.294 3.706 11 N -0.524 5.524 12 C 0.080 3.920 13 C 0.092 3.908 14 N -0.863 5.863 15 C -0.127 4.127 16 C -0.053 4.053 17 F -0.156 7.156 18 H 0.273 0.727 19 H 0.398 0.602 20 H 0.178 0.822 21 H 0.404 0.596 22 H 0.407 0.593 23 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -10.914 -0.039 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.238 4.238 3 Si 0.827 3.173 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.053 3.947 11 N -0.243 5.243 12 C -0.085 4.085 13 C -0.017 4.017 14 N -0.409 5.409 15 C -0.158 4.158 16 C -0.084 4.084 17 F -0.135 7.135 18 H 0.082 0.918 19 H 0.232 0.768 20 H 0.195 0.805 21 H 0.233 0.767 22 H 0.237 0.763 23 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.547 -9.627 -0.034 12.232 hybrid contribution -1.010 -0.176 -0.017 1.025 sum 6.537 -9.802 -0.052 11.782 Atomic orbital electron populations 1.69821 1.07315 1.28878 1.52133 1.26222 0.96617 1.02967 0.98019 0.84757 0.77853 0.76283 0.78452 1.19887 1.20500 1.18691 1.19972 0.93384 0.83026 1.46153 0.87869 1.40709 1.07382 1.01987 1.68867 1.18552 0.89270 0.85797 1.01031 1.67158 1.05025 1.31645 1.20470 1.22520 1.00384 0.85569 1.00038 1.18062 0.90058 0.89191 1.04351 1.41814 1.08285 1.03498 1.87340 1.20764 0.93216 0.96525 1.05288 1.17811 0.76834 0.94146 1.19567 1.91341 1.29525 1.97302 1.95357 0.91821 0.76759 0.80541 0.76691 0.76266 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.06 13.05 21.64 0.28 -54.78 14 2 C -0.04 -2.29 5.50 84.85 0.47 -1.83 14 3 Si 1.00 44.15 29.55 68.60 2.03 46.18 14 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 14 5 H -0.28 -11.95 7.11 99.48 0.71 -11.25 14 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 14 7 C -0.29 -16.95 9.70 84.03 0.82 -16.14 14 8 H 0.10 5.89 7.07 -2.91 -0.02 5.87 14 9 N -0.58 -32.22 5.42 -189.00 -1.02 -33.24 14 10 C 0.29 14.60 7.44 133.11 0.99 15.59 14 11 N -0.52 -23.97 9.08 -192.40 -1.75 -25.72 14 12 C 0.08 2.77 11.05 84.84 0.94 3.70 14 13 C 0.09 2.72 6.79 38.30 0.26 2.98 14 14 N -0.86 -16.05 9.10 -51.00 -0.46 -16.52 14 15 C -0.13 -4.26 10.02 22.60 0.23 -4.04 14 16 C -0.05 -2.33 7.35 22.60 0.17 -2.16 14 17 F -0.16 -6.98 16.64 44.97 0.75 -6.23 14 18 H 0.27 14.99 8.31 -92.71 -0.77 14.22 14 19 H 0.40 23.02 7.35 -92.71 -0.68 22.34 14 20 H 0.18 4.64 8.06 -2.91 -0.02 4.62 14 21 H 0.40 5.78 8.86 -92.71 -0.82 4.96 14 22 H 0.41 5.62 8.85 -92.71 -0.82 4.80 14 23 H 0.16 4.18 8.06 -2.91 -0.02 4.15 14 Total: -1.00 -66.49 218.57 2.64 -63.84 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -1.04 Total: 28.35 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 3.86 Total: -1.88 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -2.95 Total: -130.26 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.75 Total: -6.23 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.49 2.64 -63.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181812.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.900 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds