Wall clock time and date at job start Sun Mar 29 2020 21:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86803 * 120.00268 * 2 1 4 4 H 1.48498 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00181 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00227 * 3 2 1 7 7 C 1.38803 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36908 * 119.99780 * 0.27482 * 7 2 1 10 10 C 1.38940 * 119.99692 * 179.72347 * 9 7 2 11 11 C 1.38959 * 119.65244 * 359.97438 * 10 9 7 12 12 C 1.39065 * 119.02441 * 180.02562 * 11 10 9 13 13 N 1.39352 * 120.83259 * 179.97438 * 12 11 10 14 14 C 1.39834 * 118.34454 * 0.02562 * 12 11 10 15 15 F 1.35107 * 120.39444 * 180.02562 * 14 12 11 16 16 C 1.37983 * 119.20840 * 0.02562 * 14 12 11 17 17 N 1.32062 * 120.91358 * 359.72358 * 16 14 12 18 18 H 0.97000 * 119.99190 * 359.97438 * 1 2 3 19 19 H 0.97000 * 120.00463 * 359.72568 * 9 7 2 20 20 H 1.07999 * 120.49273 * 0.02562 * 11 10 9 21 21 H 0.97007 * 119.99484 * 0.02562 * 13 12 11 22 22 H 0.97002 * 120.00792 * 179.97438 * 13 12 11 23 23 H 1.08001 * 119.54148 * 180.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3462 0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8912 2.3964 1.2125 7 6 2.0098 -1.2021 -0.0005 8 1 3.0898 -1.2021 -0.0010 9 7 1.3252 -2.3877 -0.0068 10 6 2.0198 -3.5910 -0.0131 11 6 3.4094 -3.5826 -0.0136 12 6 4.0915 -4.7944 -0.0206 13 7 5.4845 -4.8300 -0.0219 14 6 3.3446 -5.9766 -0.0273 15 9 3.9647 -7.1769 -0.0336 16 6 1.9667 -5.9025 -0.0274 17 7 1.3501 -4.7348 -0.0157 18 1 -0.4849 0.8401 0.0004 19 1 0.3552 -2.3877 -0.0068 20 1 3.9518 -2.6487 -0.0087 21 1 5.9908 -4.0025 -0.0175 22 1 5.9481 -5.6821 -0.0264 23 1 1.3846 -6.8122 -0.0321 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182627.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:09 Heat of formation + Delta-G solvation = -11.496415 kcal Electronic energy + Delta-G solvation = -11835.173516 eV Core-core repulsion = 9404.491856 eV Total energy + Delta-G solvation = -2430.681661 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.74973 -38.96924 -35.48689 -34.35250 -31.87030 -28.87796 -28.04072 -24.89432 -22.54129 -21.16999 -18.24291 -17.16473 -16.85799 -16.02278 -15.15990 -14.78907 -14.75614 -13.98444 -13.46091 -13.08386 -12.89858 -12.64053 -11.75015 -11.42774 -11.20162 -11.02200 -10.47152 -10.42727 -10.14045 -8.77210 -8.47114 -7.36728 -6.93311 -6.67806 -3.88510 2.23275 2.50271 3.09135 3.10711 3.14808 3.93000 4.26216 4.62362 4.90921 5.20247 5.27060 5.61877 6.12115 6.33670 6.50618 6.79755 6.96701 7.19934 7.36362 7.70728 8.03568 8.15932 8.54404 8.89388 9.25918 9.64629 10.48487 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.060727 B = 0.009331 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.968994 B = 3000.170144 C = 3451.291967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.023 3.977 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.300 4.300 8 H 0.106 0.894 9 N -0.527 5.527 10 C 0.383 3.617 11 C -0.318 4.318 12 C 0.263 3.737 13 N -0.872 5.872 14 C -0.166 4.166 15 F -0.164 7.164 16 C 0.172 3.828 17 N -0.581 5.581 18 H 0.277 0.723 19 H 0.405 0.595 20 H 0.128 0.872 21 H 0.397 0.603 22 H 0.396 0.604 23 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -4.284 -0.039 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.131 5.131 10 C 0.140 3.860 11 C -0.351 4.351 12 C 0.151 3.849 13 N -0.412 5.412 14 C -0.198 4.198 15 F -0.143 7.143 16 C 0.006 3.994 17 N -0.303 5.303 18 H 0.087 0.913 19 H 0.241 0.759 20 H 0.146 0.854 21 H 0.225 0.775 22 H 0.223 0.777 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.782 -3.689 -0.031 6.858 hybrid contribution 1.366 0.614 -0.006 1.497 sum 7.148 -3.075 -0.037 7.781 Atomic orbital electron populations 1.69719 1.06066 1.28761 1.47187 1.25382 0.95794 1.00076 0.96911 0.85693 0.79347 0.80567 0.78114 1.19103 1.20394 1.20398 1.19805 0.93110 0.82130 1.48034 0.87685 1.40823 1.08764 1.01087 1.62459 1.17968 0.87912 0.85936 0.94230 1.20339 0.93513 0.95744 1.25504 1.17619 0.83716 0.92578 0.90953 1.42144 1.03243 1.10480 1.85327 1.17553 0.91714 0.79101 1.31448 1.91272 1.83138 1.43346 1.96586 1.21857 0.89270 0.95407 0.92823 1.67171 1.39303 0.96742 1.27076 0.91291 0.75921 0.85449 0.77495 0.77668 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.29 13.05 55.49 0.72 -22.57 14 2 C 0.02 0.58 5.50 -17.45 -0.10 0.49 14 3 Si 0.94 19.28 29.55 -169.99 -5.02 14.26 14 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 14 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 14 7 C -0.30 -7.63 9.54 -15.08 -0.14 -7.77 14 8 H 0.11 2.53 5.65 -52.49 -0.30 2.23 14 9 N -0.53 -13.40 5.44 -11.18 -0.06 -13.46 14 10 C 0.38 9.16 7.61 -155.02 -1.18 7.98 14 11 C -0.32 -6.91 9.21 -39.01 -0.36 -7.27 14 12 C 0.26 5.13 6.82 -83.54 -0.57 4.56 14 13 N -0.87 -13.07 9.09 32.56 0.30 -12.78 14 14 C -0.17 -3.28 7.35 -39.08 -0.29 -3.57 14 15 F -0.16 -3.03 16.76 2.25 0.04 -2.99 14 16 C 0.17 3.47 11.15 -17.55 -0.20 3.27 14 17 N -0.58 -13.30 10.39 -12.46 -0.13 -13.43 14 18 H 0.28 6.85 8.31 -40.82 -0.34 6.51 14 19 H 0.40 10.67 8.01 -40.82 -0.33 10.35 14 20 H 0.13 2.69 5.93 -52.49 -0.31 2.38 14 21 H 0.40 5.09 8.86 -40.82 -0.36 4.73 14 22 H 0.40 5.22 8.42 -40.82 -0.34 4.87 14 23 H 0.15 2.42 8.06 -52.49 -0.42 1.99 14 LS Contribution 216.03 15.07 3.26 3.26 Total: -1.00 -27.57 216.03 -4.93 -32.49 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -1.20 Total: 17.53 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.83 Total: -2.32 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: 0.83 Total: -62.24 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -27.57 -4.93 -32.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182627.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.998 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds