Wall clock time and date at job start Sun Mar 29 2020 21:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38394 * 120.81375 * 2 1 4 4 C 1.38588 * 119.23319 * 179.75338 * 3 2 1 5 5 F 1.35095 * 119.55010 * 180.25360 * 4 3 2 6 6 N 1.32072 * 120.89820 * 0.53157 * 4 3 2 7 7 C 1.31817 * 121.78107 * 359.72290 * 6 4 3 8 8 C 1.39010 * 120.66698 * 0.02562 * 7 6 4 9 9 N 1.39403 * 120.47532 * 180.02562 * 8 7 6 10 10 C 1.36834 * 120.00383 * 359.96666 * 9 8 7 11 11 H 1.08006 * 119.99433 * 0.02562 * 10 9 8 12 12 C 1.38774 * 120.00186 * 180.02562 * 10 9 8 13 13 N 1.31604 * 120.00293 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00018 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47240 * 90.00066 * 14 12 10 16 16 H 1.48501 * 109.46941 * 210.00322 * 14 12 10 17 17 H 1.48505 * 109.47014 * 329.99602 * 14 12 10 18 18 H 1.09002 * 109.47152 * 269.71908 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.72008 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.71989 * 1 2 3 21 21 H 1.07997 * 120.38201 * 0.02562 * 3 2 1 22 22 H 1.07994 * 119.66866 * 179.97438 * 7 6 4 23 23 H 0.97005 * 119.99698 * 179.97438 * 9 8 7 24 24 H 0.97001 * 120.00360 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1886 0.0000 4 6 3.6013 1.1504 0.0052 5 9 4.2997 2.3068 0.0104 6 7 4.2480 -0.0012 -0.0004 7 6 3.6110 -1.1552 -0.0056 8 6 2.2215 -1.1980 -0.0060 9 7 1.5519 -2.4207 -0.0110 10 6 2.2625 -3.5900 -0.0163 11 1 3.3423 -3.5657 -0.0162 12 6 1.5959 -4.8072 -0.0219 13 7 2.2794 -5.9318 -0.0265 14 14 -0.2717 -4.8492 -0.0228 15 1 -0.7660 -4.8543 -1.4231 16 1 -0.7395 -6.0756 0.6718 17 1 -0.7941 -3.6512 0.6823 18 1 -0.3633 -0.0050 1.0277 19 1 -0.3633 -0.8875 -0.5182 20 1 -0.3633 0.8925 -0.5095 21 1 1.6956 2.1349 0.0004 22 1 4.1741 -2.0766 -0.0105 23 1 0.5821 -2.4425 -0.0109 24 1 1.8134 -6.7826 -0.0300 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183563.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:41 Heat of formation + Delta-G solvation = -25.757462 kcal Electronic energy + Delta-G solvation = -11829.694951 eV Core-core repulsion = 9463.820796 eV Total energy + Delta-G solvation = -2365.874155 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.55510 -41.00995 -37.40231 -34.82114 -33.79291 -30.26841 -28.67402 -26.62563 -23.53981 -22.81694 -20.45834 -18.24728 -18.19804 -17.63028 -16.72348 -16.43149 -15.57907 -15.12987 -14.87020 -14.47796 -14.29162 -13.73591 -13.62098 -13.40567 -13.15715 -12.63639 -12.49733 -12.27919 -12.00172 -10.88604 -10.42918 -10.26436 -8.77667 -8.51101 -5.85545 0.31705 0.47094 1.26981 1.34081 1.37691 2.14872 2.70993 2.85926 3.12399 3.16078 3.82206 3.96756 4.18407 4.52586 4.67731 4.82016 4.86842 5.00865 5.28213 5.35780 5.43827 5.76216 6.02344 6.52688 7.00144 7.17211 7.30231 8.62965 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.056628 B = 0.010550 C = 0.008936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.333461 B = 2653.346655 C = 3132.534802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.137 4.137 3 C -0.115 4.115 4 C 0.155 3.845 5 F -0.138 7.138 6 N -0.495 5.495 7 C 0.016 3.984 8 C 0.148 3.852 9 N -0.575 5.575 10 C -0.318 4.318 11 H 0.089 0.911 12 C -0.010 4.010 13 N -0.919 5.919 14 Si 0.947 3.053 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.239 1.239 18 H 0.083 0.917 19 H 0.058 0.942 20 H 0.099 0.901 21 H 0.171 0.829 22 H 0.144 0.856 23 H 0.391 0.609 24 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 9.463 0.075 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.151 4.151 3 C -0.137 4.137 4 C -0.002 4.002 5 F -0.118 7.118 6 N -0.209 5.209 7 C -0.150 4.150 8 C 0.028 3.972 9 N -0.185 5.185 10 C -0.447 4.447 11 H 0.106 0.894 12 C -0.211 4.211 13 N -0.557 5.557 14 Si 0.769 3.231 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.163 1.163 18 H 0.101 0.899 19 H 0.076 0.924 20 H 0.118 0.882 21 H 0.189 0.811 22 H 0.161 0.839 23 H 0.229 0.771 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.344 8.983 0.073 11.603 hybrid contribution -1.013 -0.517 -0.004 1.137 sum -8.357 8.466 0.069 11.895 Atomic orbital electron populations 1.20658 0.87835 1.03813 1.03430 1.19782 0.97888 0.89764 1.07620 1.21456 0.91198 1.00049 1.00952 1.17913 0.87851 0.80921 1.13471 1.91460 1.80568 1.44652 1.95117 1.66525 1.43201 0.98439 1.12736 1.21678 0.90743 0.93569 1.09030 1.18768 0.92946 0.86818 0.98707 1.40973 1.07107 1.02054 1.68358 1.19318 0.93551 0.83165 1.48640 0.89358 1.25863 1.04499 0.94091 0.96649 1.69822 1.38529 0.98435 1.48875 0.85576 0.77914 0.79790 0.79861 1.18385 1.19882 1.16262 0.89875 0.92352 0.88211 0.81123 0.83883 0.77113 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.40 9.65 71.24 0.69 -1.71 14 2 C -0.14 -4.54 5.94 -19.52 -0.12 -4.66 14 3 C -0.11 -3.65 9.78 22.39 0.22 -3.43 14 4 C 0.15 6.04 8.41 84.74 0.71 6.75 14 5 F -0.14 -5.17 17.29 44.97 0.78 -4.39 14 6 N -0.50 -21.96 10.36 -196.24 -2.03 -24.00 14 7 C 0.02 0.70 10.48 84.88 0.89 1.59 14 8 C 0.15 6.07 6.63 38.43 0.25 6.33 14 9 N -0.58 -24.66 5.16 -183.97 -0.95 -25.61 14 10 C -0.32 -16.14 10.05 84.04 0.84 -15.29 14 11 H 0.09 4.95 5.94 -2.91 -0.02 4.93 14 12 C -0.01 -0.52 5.50 84.86 0.47 -0.05 14 13 N -0.92 -50.69 13.97 21.64 0.30 -50.39 14 14 Si 0.95 36.43 27.73 68.60 1.90 38.34 14 15 H -0.26 -9.61 7.11 99.48 0.71 -8.91 14 16 H -0.27 -10.56 7.11 99.48 0.71 -9.85 14 17 H -0.24 -7.98 6.52 99.48 0.65 -7.33 14 18 H 0.08 1.76 8.14 -2.39 -0.02 1.74 14 19 H 0.06 1.42 6.67 -2.39 -0.02 1.40 14 20 H 0.10 1.76 8.10 -2.38 -0.02 1.74 14 21 H 0.17 3.94 8.06 -2.91 -0.02 3.91 14 22 H 0.14 6.80 5.97 -2.91 -0.02 6.78 14 23 H 0.39 14.79 3.89 -92.70 -0.36 14.43 14 24 H 0.28 14.36 8.31 -92.71 -0.77 13.59 14 Total: -1.00 -58.87 216.75 4.77 -54.10 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.82 Total: 22.43 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 3.96 Total: -10.48 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -2.68 Total: -100.00 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 1.90 Total: 38.34 kcal Total: -58.87 4.77 -54.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183563.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.341 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds