Wall clock time and date at job start Sun Mar 29 2020 21:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36902 * 119.99587 * 2 1 4 4 H 1.08003 * 119.99705 * 204.05612 * 3 2 1 5 5 C 1.38799 * 120.00301 * 24.05480 * 3 2 1 6 6 N 1.31577 * 119.99916 * 10.49024 * 5 3 2 7 7 Si 1.86802 * 120.00116 * 190.49155 * 5 3 2 8 8 H 1.48500 * 109.46884 * 90.00175 * 7 5 3 9 9 H 1.48498 * 109.46862 * 209.99809 * 7 5 3 10 10 H 1.48492 * 109.47034 * 329.99991 * 7 5 3 11 11 C 1.38961 * 120.00504 * 180.02562 * 2 1 3 12 12 C 1.39617 * 120.13758 * 185.00165 * 11 2 1 13 13 C 1.38472 * 117.92510 * 179.97438 * 12 11 2 14 14 C 1.39102 * 118.02238 * 359.97438 * 13 12 11 15 15 F 1.35101 * 120.01528 * 179.97438 * 14 13 12 16 16 N 1.32026 * 119.96761 * 0.02562 * 14 13 12 17 17 N 1.28346 * 122.25707 * 359.97438 * 16 14 13 18 18 H 1.08995 * 109.47170 * 273.72014 * 1 2 3 19 19 H 1.08994 * 109.47201 * 33.72383 * 1 2 3 20 20 H 1.08998 * 109.46428 * 153.72414 * 1 2 3 21 21 H 0.97005 * 120.00179 * 179.97438 * 6 5 3 22 22 H 1.08007 * 121.03625 * 359.97438 * 12 11 2 23 23 H 1.08005 * 120.99066 * 179.72579 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.1591 1.2263 -0.3813 5 6 1.5458 2.3355 0.4899 6 7 0.4048 2.2536 1.1400 7 14 2.3534 3.9992 0.2264 8 1 1.8701 4.5876 -1.0485 9 1 2.0044 4.9026 1.3521 10 1 3.8274 3.8299 0.1662 11 6 2.1599 -1.2034 -0.0005 12 6 3.5521 -1.2089 0.1047 13 6 4.1979 -2.4339 0.1001 14 6 3.4204 -3.5822 -0.0086 15 9 4.0087 -4.7983 -0.0177 16 7 2.1073 -3.4829 -0.1037 17 7 1.5039 -2.3502 -0.0999 18 1 -0.3633 0.0667 1.0255 19 1 -0.3633 0.8547 -0.5705 20 1 -0.3632 -0.9215 -0.4549 21 1 -0.0169 3.0572 1.4827 22 1 4.1080 -0.2866 0.1872 23 1 5.2736 -2.4957 0.1744 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:16 Heat of formation + Delta-G solvation = 29.887593 kcal Electronic energy + Delta-G solvation = -12032.278562 eV Core-core repulsion = 9603.391447 eV Total energy + Delta-G solvation = -2428.887115 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.02493 -39.73692 -36.48074 -32.51377 -32.07585 -29.48659 -26.97113 -24.64493 -23.28397 -21.70085 -17.98169 -17.24234 -16.67615 -16.26352 -15.32713 -14.78241 -13.87406 -13.76064 -13.29762 -13.13933 -12.44183 -12.41905 -11.72261 -11.40427 -11.01363 -10.91768 -10.63521 -10.47566 -9.85865 -9.36358 -9.07718 -8.55331 -7.28143 -6.69731 -4.16028 1.74024 2.01329 2.97457 3.00159 3.03703 3.72872 4.35345 4.36278 4.68793 4.82704 5.35763 5.54390 5.79815 6.11264 6.50602 6.52717 6.71532 6.78847 7.04312 7.13568 7.20493 7.59608 8.23283 8.84540 9.07370 9.84767 10.26308 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.066641 B = 0.009893 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.058844 B = 2829.518750 C = 3185.876535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.392 5.392 3 C -0.319 4.319 4 H 0.103 0.897 5 C 0.037 3.963 6 N -0.854 5.854 7 Si 0.937 3.063 8 H -0.272 1.272 9 H -0.279 1.279 10 H -0.266 1.266 11 C 0.281 3.719 12 C -0.160 4.160 13 C -0.105 4.105 14 C 0.104 3.896 15 F -0.132 7.132 16 N -0.216 5.216 17 N -0.320 5.320 18 H 0.064 0.936 19 H 0.064 0.936 20 H 0.050 0.950 21 H 0.277 0.723 22 H 0.145 0.855 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 0.024 -1.314 4.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.080 5.080 3 C -0.448 4.448 4 H 0.120 0.880 5 C -0.171 4.171 6 N -0.488 5.488 7 Si 0.762 3.238 8 H -0.198 1.198 9 H -0.204 1.204 10 H -0.190 1.190 11 C 0.035 3.965 12 C -0.195 4.195 13 C -0.134 4.134 14 C -0.065 4.065 15 F -0.113 7.113 16 N -0.066 5.066 17 N -0.181 5.181 18 H 0.082 0.918 19 H 0.083 0.917 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.163 0.837 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.454 -0.246 -1.335 2.804 hybrid contribution 1.854 1.385 0.135 2.318 sum 4.308 1.139 -1.200 4.615 Atomic orbital electron populations 1.21572 0.78858 0.99733 1.02374 1.42538 1.05597 1.00784 1.59037 1.19756 1.01044 0.83855 1.40181 0.87978 1.25531 0.96463 1.00709 0.94431 1.70095 1.16679 1.30586 1.31405 0.85747 0.79548 0.80080 0.78384 1.19797 1.20386 1.19003 1.20052 0.89963 0.88564 0.97907 1.21555 0.93792 0.98216 1.05900 1.21679 1.00735 0.91484 0.99463 1.19166 0.90757 0.80755 1.15779 1.91458 1.82599 1.41966 1.95247 1.72312 1.07300 1.19298 1.07668 1.72838 1.27948 0.92419 1.24913 0.91784 0.91697 0.93149 0.91285 0.83733 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.73 8.79 59.85 0.53 3.25 14 2 N -0.39 -9.55 3.12 -122.28 -0.38 -9.94 14 3 C -0.32 -7.64 8.93 -15.08 -0.13 -7.77 14 4 H 0.10 2.29 6.38 -52.48 -0.34 1.96 14 5 C 0.04 0.87 5.14 -17.45 -0.09 0.78 14 6 N -0.85 -20.90 10.64 55.49 0.59 -20.31 14 7 Si 0.94 18.02 29.57 -169.99 -5.03 12.99 14 8 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 9 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 10 H -0.27 -4.97 7.11 56.52 0.40 -4.57 14 11 C 0.28 6.64 7.41 -154.80 -1.15 5.49 14 12 C -0.16 -3.31 9.35 -38.98 -0.36 -3.67 14 13 C -0.11 -1.98 10.18 -39.17 -0.40 -2.38 14 14 C 0.10 2.19 8.52 -17.15 -0.15 2.04 14 15 F -0.13 -2.60 17.30 2.25 0.04 -2.56 14 16 N -0.22 -5.06 11.50 30.30 0.35 -4.71 14 17 N -0.32 -7.76 10.21 31.24 0.32 -7.44 14 18 H 0.06 1.55 7.41 -51.93 -0.38 1.16 14 19 H 0.06 1.50 7.25 -51.93 -0.38 1.12 14 20 H 0.05 1.11 7.21 -51.93 -0.37 0.73 14 21 H 0.28 6.35 8.31 -40.82 -0.34 6.01 14 22 H 0.14 2.75 6.40 -52.48 -0.34 2.41 14 23 H 0.14 2.03 8.06 -52.48 -0.42 1.61 14 LS Contribution 213.00 15.07 3.21 3.21 Total: -1.00 -26.37 213.00 -4.02 -30.39 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -1.36 Total: 0.64 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.76 Total: -2.26 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.88 Total: -42.40 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -26.37 -4.02 -30.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.275 kcal (2) G-P(sol) polarization free energy of solvation -26.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds