Wall clock time and date at job start Sun Mar 29 2020 21:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.52404 * 2 1 4 4 C 1.53001 * 117.46387 * 214.53623 * 2 1 3 5 5 H 1.08996 * 119.29640 * 141.09408 * 4 2 1 6 6 C 1.54757 * 118.23064 * 346.07015 * 4 2 1 7 7 C 1.54889 * 103.96125 * 272.22861 * 6 4 2 8 8 H 1.08998 * 110.75683 * 156.33176 * 7 6 4 9 9 N 1.46503 * 110.75431 * 279.51212 * 7 6 4 10 10 C 1.36933 * 120.00475 * 271.06867 * 9 7 6 11 11 H 1.07998 * 119.99717 * 359.72326 * 10 9 7 12 12 C 1.38809 * 120.00313 * 179.97438 * 10 9 7 13 13 N 1.31620 * 119.99769 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00249 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46625 * 90.00211 * 14 12 10 16 16 H 1.48496 * 109.47440 * 210.00003 * 14 12 10 17 17 H 1.48495 * 109.46945 * 330.00281 * 14 12 10 18 18 C 1.54882 * 102.91864 * 37.92357 * 7 6 4 19 19 C 1.53000 * 117.45895 * 145.49107 * 2 1 3 20 20 H 1.08995 * 119.29876 * 219.84009 * 19 2 1 21 21 H 1.08998 * 109.47423 * 281.25579 * 1 2 3 22 22 H 1.08993 * 109.47096 * 41.26421 * 1 2 3 23 23 H 1.09010 * 109.46880 * 161.25753 * 1 2 3 24 24 H 1.09000 * 109.47430 * 205.49583 * 3 2 1 25 25 H 1.09004 * 109.47225 * 325.49169 * 3 2 1 26 26 H 1.09001 * 109.47776 * 85.49591 * 3 2 1 27 27 H 1.08995 * 110.69120 * 153.57697 * 6 4 2 28 28 H 1.09005 * 110.50116 * 30.78167 * 6 4 2 29 29 H 0.97000 * 119.99245 * 91.07219 * 9 7 6 30 30 H 0.96996 * 120.00078 * 179.97438 * 13 12 10 31 31 H 1.09005 * 110.48868 * 80.64143 * 18 7 6 32 32 H 1.08998 * 110.48964 * 203.28627 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1893 1.3806 0.0000 4 6 2.2357 -1.1183 -0.7697 5 1 3.1380 -0.8887 -1.3363 6 6 1.3990 -2.3423 -1.2135 7 6 1.4703 -3.3032 -0.0009 8 1 0.6212 -3.9868 0.0007 9 7 2.7326 -4.0467 -0.0011 10 6 2.8250 -5.2391 -0.6679 11 1 1.9659 -5.6337 -1.1900 12 6 4.0213 -5.9432 -0.6686 13 7 5.0667 -5.4649 -0.0277 14 14 4.1470 -7.5702 -1.5777 15 1 4.5789 -7.3232 -2.9768 16 1 5.1406 -8.4408 -0.8994 17 1 2.8216 -8.2398 -1.5795 18 6 1.4011 -2.3392 1.2094 19 6 2.2355 -1.1187 0.7691 20 1 3.1291 -0.8864 1.3484 21 1 -0.3634 0.2006 1.0079 22 1 -0.3633 0.7724 -0.6777 23 1 -0.3633 -0.9733 -0.3302 24 1 3.1829 1.3089 -0.4423 25 1 1.5816 2.0734 -0.5822 26 1 2.2730 1.7434 1.0245 27 1 1.8369 -2.8085 -2.0961 28 1 0.3673 -2.0492 -1.4079 29 1 3.5031 -3.6942 0.4713 30 1 5.9025 -5.9570 -0.0278 31 1 0.3697 -2.0457 1.4049 32 1 1.8405 -2.8033 2.0924 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170715624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:36 Heat of formation + Delta-G solvation = 25.713844 kcal Electronic energy + Delta-G solvation = -12555.793730 eV Core-core repulsion = 10516.870848 eV Total energy + Delta-G solvation = -2038.922881 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62263 -34.62773 -32.08137 -29.52601 -27.74036 -27.58026 -26.54266 -23.41951 -19.94775 -19.19063 -17.85676 -17.04868 -15.37327 -14.75779 -14.30388 -13.81768 -13.27857 -13.11142 -12.67345 -12.20704 -11.80644 -11.75413 -11.33766 -11.22976 -10.86630 -10.70084 -10.62541 -10.41530 -10.12561 -9.89637 -9.64684 -9.09482 -8.97265 -8.78153 -6.88512 -5.72189 -2.99747 3.45729 3.50816 3.52523 4.04683 4.62644 4.90504 5.15910 5.21432 5.34594 5.60836 5.71438 5.72653 5.77685 5.89444 5.99073 6.10135 6.12552 6.20990 6.23778 6.30077 6.35181 6.46706 6.48295 6.71673 6.77734 6.89351 6.97691 7.13042 7.74624 8.47392 9.58065 10.19151 10.54152 11.50611 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068650 B = 0.008590 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.769360 B = 3258.661019 C = 3351.748640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.136 4.136 5 H 0.099 0.901 6 C -0.122 4.122 7 C 0.176 3.824 8 H 0.051 0.949 9 N -0.715 5.715 10 C -0.237 4.237 11 H 0.070 0.930 12 C -0.015 4.015 13 N -0.933 5.933 14 Si 0.906 3.094 15 H -0.291 1.291 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.104 4.104 19 C -0.153 4.153 20 H 0.100 0.900 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.385 0.615 30 H 0.254 0.746 31 H 0.063 0.937 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 10.455 0.498 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.121 4.121 3 C -0.168 4.168 4 C -0.155 4.155 5 H 0.117 0.883 6 C -0.162 4.162 7 C 0.065 3.935 8 H 0.069 0.931 9 N -0.355 5.355 10 C -0.368 4.368 11 H 0.088 0.912 12 C -0.211 4.211 13 N -0.582 5.582 14 Si 0.737 3.263 15 H -0.218 1.218 16 H -0.218 1.218 17 H -0.208 1.208 18 C -0.142 4.142 19 C -0.171 4.171 20 H 0.118 0.882 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.713 10.259 0.421 12.842 hybrid contribution 0.628 -0.731 -0.398 1.043 sum -7.085 9.528 0.023 11.874 Atomic orbital electron populations 1.21392 0.93110 1.02187 1.00940 1.21634 0.94432 0.90836 1.05165 1.21267 0.99935 0.94302 1.01246 1.23406 1.00734 0.96780 0.94532 0.88335 1.22883 0.97369 0.94629 1.01320 1.21283 0.90364 0.91180 0.90634 0.93092 1.42327 1.08844 1.22179 1.62133 1.19274 0.96261 0.96505 1.24795 0.91226 1.24733 0.96087 0.99115 1.01154 1.69670 1.01825 1.39626 1.47046 0.86204 0.77166 0.83710 0.79222 1.21817 1.21840 1.20798 1.22287 0.98508 0.94130 0.99304 1.23246 1.01142 0.97151 0.95586 0.88184 0.92830 0.93009 0.91418 0.92644 0.92608 0.92653 0.91197 0.92612 0.78157 0.93606 0.91812 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.45 37.16 0.31 -1.21 16 2 C -0.12 -1.75 2.68 -154.51 -0.41 -2.16 16 3 C -0.11 -1.37 9.84 37.15 0.37 -1.00 16 4 C -0.14 -2.38 6.52 -89.24 -0.58 -2.96 16 5 H 0.10 1.79 8.13 -51.93 -0.42 1.37 16 6 C -0.12 -2.27 5.95 -24.81 -0.15 -2.41 16 7 C 0.18 3.63 3.56 -65.94 -0.23 3.39 16 8 H 0.05 1.06 8.11 -51.93 -0.42 0.63 16 9 N -0.71 -18.32 5.19 -51.50 -0.27 -18.59 16 10 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 13 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 14 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.10 -1.83 5.83 -25.08 -0.15 -1.97 16 19 C -0.15 -2.58 6.58 -89.50 -0.59 -3.17 16 20 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 23 H 0.07 0.91 4.98 -51.92 -0.26 0.65 16 24 H 0.05 0.70 7.96 -51.93 -0.41 0.28 16 25 H 0.05 0.61 8.01 -51.93 -0.42 0.19 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.06 0.91 5.99 -51.93 -0.31 0.60 16 29 H 0.38 10.55 7.80 -40.82 -0.32 10.23 16 30 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.06 0.98 6.79 -51.93 -0.35 0.63 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 256.64 15.07 3.87 3.87 Total: -1.00 -29.74 256.64 -7.37 -37.10 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.99 Total: 6.73 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.68 Total: -18.87 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.46 Total: -46.50 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.74 -7.37 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170715624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.818 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds