Wall clock time and date at job start Sun Mar 29 2020 21:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47089 * 2 1 4 4 C 1.52998 * 109.47486 * 239.99918 * 2 1 3 5 5 C 1.52997 * 109.47362 * 175.00119 * 4 2 1 6 6 C 1.50696 * 109.47137 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00027 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00118 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47189 * 90.00356 * 10 8 6 12 12 H 1.48505 * 109.47550 * 210.00407 * 10 8 6 13 13 H 1.48504 * 109.47188 * 330.00591 * 10 8 6 14 14 N 1.46907 * 109.47010 * 119.99490 * 2 1 3 15 15 C 1.48226 * 110.99620 * 50.39248 * 14 2 1 16 16 C 1.51117 * 105.35894 * 215.09974 * 15 14 2 17 17 C 1.30962 * 109.45975 * 16.97228 * 16 15 14 18 18 C 1.48223 * 111.00259 * 296.75349 * 14 2 1 19 19 H 1.08998 * 109.47259 * 171.48110 * 1 2 3 20 20 H 1.08999 * 109.47534 * 291.47870 * 1 2 3 21 21 H 1.09005 * 109.47268 * 51.48502 * 1 2 3 22 22 H 1.09004 * 109.46544 * 294.99819 * 4 2 1 23 23 H 1.08996 * 109.46973 * 54.99428 * 4 2 1 24 24 H 1.09004 * 109.47003 * 300.00179 * 5 4 2 25 25 H 1.09004 * 109.47367 * 59.99830 * 5 4 2 26 26 H 0.96998 * 120.00325 * 180.02562 * 9 8 6 27 27 H 1.08999 * 110.26905 * 96.12618 * 15 14 2 28 28 H 1.08997 * 110.27098 * 334.06819 * 15 14 2 29 29 H 1.08003 * 125.27236 * 197.24388 * 16 15 14 30 30 H 1.08002 * 125.27664 * 180.02562 * 17 16 15 31 31 H 1.09006 * 110.26651 * 25.92210 * 18 14 2 32 32 H 1.08998 * 110.26522 * 263.87244 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3242 -2.5437 7 1 3.3689 -1.8054 -3.2124 8 6 5.4185 -1.3605 -2.8154 9 7 6.2690 -0.7751 -2.0008 10 14 6.0412 -2.2411 -4.3405 11 1 6.0909 -1.2871 -5.4774 12 1 7.4028 -2.7751 -4.0827 13 1 5.1252 -3.3614 -4.6740 14 7 2.0196 -0.6924 1.1996 15 6 1.3649 -2.0131 1.3549 16 6 1.2072 -2.2089 2.8450 17 6 1.3455 -1.0574 3.4534 18 6 1.6094 0.0235 2.4309 19 1 -0.3634 -1.0163 -0.1522 20 1 -0.3634 0.3763 0.9563 21 1 -0.3634 0.6400 -0.8041 22 1 1.7517 -1.7715 -1.2054 23 1 1.6054 -0.2618 -2.1369 24 1 3.8532 0.4370 -1.3572 25 1 3.9995 -1.0728 -0.4258 26 1 7.2196 -0.8002 -2.1921 27 1 1.9940 -2.7982 0.9354 28 1 0.3891 -2.0103 0.8692 29 1 1.0150 -3.1530 3.3332 30 1 1.2813 -0.9041 4.5206 31 1 0.7025 0.6000 2.2481 32 1 2.4114 0.6782 2.7719 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:11 Heat of formation + Delta-G solvation = 25.770653 kcal Electronic energy + Delta-G solvation = -12408.392847 eV Core-core repulsion = 10369.472429 eV Total energy + Delta-G solvation = -2038.920418 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57601 -34.85687 -32.71434 -29.98521 -28.41767 -28.08494 -25.15829 -22.72340 -20.84496 -19.52029 -18.56238 -16.32315 -16.03319 -15.29451 -14.42859 -13.78868 -13.52520 -13.10534 -12.70312 -12.05731 -11.99351 -11.91257 -11.46812 -11.28282 -11.06490 -10.93291 -10.78904 -10.42875 -10.12944 -9.63353 -9.35577 -9.05360 -8.86032 -8.21064 -7.74027 -5.86354 -3.87987 2.33490 3.38386 3.44376 3.47752 4.41104 4.55506 4.94302 4.97857 5.30990 5.48752 5.49003 5.56824 5.68231 5.76840 5.78976 5.86971 6.11332 6.23995 6.29984 6.41358 6.53844 6.67106 6.83468 6.93467 7.27850 7.33093 7.54765 7.86607 8.08917 8.24408 8.58790 9.21017 9.74546 11.24663 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.053277 B = 0.008184 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.430799 B = 3420.501967 C = 3570.778858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.068 3.932 3 H 0.080 0.920 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.480 5.480 15 C 0.043 3.957 16 C -0.166 4.166 17 C -0.176 4.176 18 C 0.045 3.955 19 H 0.059 0.941 20 H 0.051 0.949 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.009 0.991 25 H 0.031 0.969 26 H 0.258 0.742 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.056 0.944 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 0.042 8.057 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.041 4.041 3 H 0.098 0.902 4 C -0.137 4.137 5 C -0.009 4.009 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.204 5.204 15 C -0.084 4.084 16 C -0.184 4.184 17 C -0.194 4.194 18 C -0.083 4.083 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.074 0.926 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.379 0.049 7.988 13.097 hybrid contribution -0.435 -0.403 -0.727 0.938 sum -10.814 -0.354 7.262 13.030 Atomic orbital electron populations 1.22571 0.98801 1.01910 1.01407 1.22091 0.91221 0.98993 0.91807 0.90197 1.21659 1.00843 0.98221 0.92987 1.19008 0.88059 0.96740 0.97048 1.21338 0.91881 1.34111 1.08472 0.93098 1.25005 0.97132 0.95799 0.96508 1.69983 1.02180 1.44348 1.36822 0.86676 0.78133 0.79977 0.83661 1.20823 1.21314 1.20027 1.65889 1.51789 1.01815 1.00876 1.22212 0.98614 0.94147 0.93472 1.23628 1.00398 0.98220 0.96195 1.23524 1.01540 0.95393 0.98949 1.22156 0.99586 0.96498 0.90058 0.92243 0.93015 0.92130 0.93446 0.93232 0.97218 0.95029 0.93220 0.89457 0.91858 0.85318 0.85388 0.92613 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.32 37.16 0.31 -2.38 16 2 C 0.07 1.20 2.35 -67.71 -0.16 1.04 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.10 -2.11 4.61 -26.73 -0.12 -2.24 16 5 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 6 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 10 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.48 -8.60 5.01 -226.70 -1.14 -9.74 16 15 C 0.04 0.68 5.43 -4.04 -0.02 0.66 16 16 C -0.17 -2.24 10.95 -35.81 -0.39 -2.63 16 17 C -0.18 -2.29 10.95 -35.81 -0.39 -2.68 16 18 C 0.04 0.66 6.42 -4.04 -0.03 0.63 16 19 H 0.06 0.83 6.16 -51.93 -0.32 0.51 16 20 H 0.05 0.67 5.95 -51.93 -0.31 0.36 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.05 1.00 7.37 -51.93 -0.38 0.62 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.06 0.94 5.14 -51.93 -0.27 0.67 16 29 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.06 0.75 5.70 -51.93 -0.30 0.46 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 256.71 15.07 3.87 3.87 Total: -1.00 -31.40 256.71 -7.81 -39.21 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.90 Total: -2.56 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.35 Total: -20.95 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.40 Total: -36.83 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.40 -7.81 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.977 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds