Wall clock time and date at job start Sun Mar 29 2020 21:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47089 * 2 1 4 4 C 1.52998 * 109.47486 * 239.99918 * 2 1 3 5 5 C 1.52997 * 109.47362 * 175.00119 * 4 2 1 6 6 C 1.50696 * 109.47137 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00027 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00118 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47189 * 90.00356 * 10 8 6 12 12 H 1.48505 * 109.47550 * 210.00407 * 10 8 6 13 13 H 1.48504 * 109.47188 * 330.00591 * 10 8 6 14 14 N 1.46907 * 109.47010 * 119.99490 * 2 1 3 15 15 C 1.48226 * 110.99620 * 50.39248 * 14 2 1 16 16 C 1.51117 * 105.35894 * 215.09974 * 15 14 2 17 17 C 1.30962 * 109.45975 * 16.97228 * 16 15 14 18 18 C 1.48223 * 111.00259 * 296.75349 * 14 2 1 19 19 H 1.08998 * 109.47259 * 171.48110 * 1 2 3 20 20 H 1.08999 * 109.47534 * 291.47870 * 1 2 3 21 21 H 1.09005 * 109.47268 * 51.48502 * 1 2 3 22 22 H 1.09004 * 109.46544 * 294.99819 * 4 2 1 23 23 H 1.08996 * 109.46973 * 54.99428 * 4 2 1 24 24 H 1.09004 * 109.47003 * 300.00179 * 5 4 2 25 25 H 1.09004 * 109.47367 * 59.99830 * 5 4 2 26 26 H 0.96998 * 120.00325 * 180.02562 * 9 8 6 27 27 H 1.08999 * 110.26905 * 96.12618 * 15 14 2 28 28 H 1.08997 * 110.27098 * 334.06819 * 15 14 2 29 29 H 1.08003 * 125.27236 * 197.24388 * 16 15 14 30 30 H 1.08002 * 125.27664 * 180.02562 * 17 16 15 31 31 H 1.09006 * 110.26651 * 25.92210 * 18 14 2 32 32 H 1.08998 * 110.26522 * 263.87244 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3242 -2.5437 7 1 3.3689 -1.8054 -3.2124 8 6 5.4185 -1.3605 -2.8154 9 7 6.2690 -0.7751 -2.0008 10 14 6.0412 -2.2411 -4.3405 11 1 6.0909 -1.2871 -5.4774 12 1 7.4028 -2.7751 -4.0827 13 1 5.1252 -3.3614 -4.6740 14 7 2.0196 -0.6924 1.1996 15 6 1.3649 -2.0131 1.3549 16 6 1.2072 -2.2089 2.8450 17 6 1.3455 -1.0574 3.4534 18 6 1.6094 0.0235 2.4309 19 1 -0.3634 -1.0163 -0.1522 20 1 -0.3634 0.3763 0.9563 21 1 -0.3634 0.6400 -0.8041 22 1 1.7517 -1.7715 -1.2054 23 1 1.6054 -0.2618 -2.1369 24 1 3.8532 0.4370 -1.3572 25 1 3.9995 -1.0728 -0.4258 26 1 7.2196 -0.8002 -2.1921 27 1 1.9940 -2.7982 0.9354 28 1 0.3891 -2.0103 0.8692 29 1 1.0150 -3.1530 3.3332 30 1 1.2813 -0.9041 4.5206 31 1 0.7025 0.6000 2.2481 32 1 2.4114 0.6782 2.7719 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:11 Heat of formation + Delta-G solvation = 5.254326 kcal Electronic energy + Delta-G solvation = -12409.282501 eV Core-core repulsion = 10369.472429 eV Total energy + Delta-G solvation = -2039.810072 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82548 -36.44305 -34.73265 -31.80899 -29.73894 -29.26364 -27.09493 -24.20094 -22.71910 -20.74769 -19.86482 -18.38435 -17.47934 -16.54193 -16.46019 -15.25327 -14.81530 -14.61348 -14.44872 -13.76676 -13.39788 -13.24009 -13.00463 -12.85446 -12.68176 -12.51807 -12.31602 -12.03134 -11.81590 -11.48203 -11.29585 -10.96366 -10.51423 -10.28672 -8.98413 -8.14882 -6.26274 1.31411 1.39117 1.41331 1.52183 2.42844 3.15166 3.17575 3.81247 3.84755 4.07583 4.20458 4.38177 4.48746 4.57131 4.66088 4.71364 4.76901 4.89229 4.95356 5.04335 5.14223 5.27742 5.42431 5.48663 5.56414 5.80351 5.85851 5.98569 6.12339 6.24593 6.31844 6.93297 7.42084 8.96660 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.053277 B = 0.008184 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.430799 B = 3420.501967 C = 3570.778858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 H 0.068 0.932 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.057 0.943 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.519 5.519 15 C 0.040 3.960 16 C -0.173 4.173 17 C -0.168 4.168 18 C 0.040 3.960 19 H 0.064 0.936 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.055 0.945 24 H -0.021 1.021 25 H -0.001 1.001 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.524 -0.526 8.131 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.037 4.037 3 H 0.086 0.914 4 C -0.126 4.126 5 C 0.001 3.999 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.243 5.243 15 C -0.087 4.087 16 C -0.191 4.191 17 C -0.187 4.187 18 C -0.087 4.087 19 H 0.083 0.917 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.065 0.935 23 H 0.074 0.926 24 H -0.003 1.003 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.090 0.910 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.745 -0.516 8.065 14.257 hybrid contribution 0.028 -0.192 -0.726 0.751 sum -11.717 -0.708 7.339 13.844 Atomic orbital electron populations 1.22425 0.95460 1.02652 1.02896 1.21886 0.93768 0.97612 0.90406 0.91371 1.21463 0.96752 0.98895 0.95456 1.18815 0.91979 0.94060 0.95000 1.21795 0.92603 1.34507 1.09364 0.92514 1.25999 0.97374 0.96505 1.00124 1.70132 1.02617 1.45618 1.38985 0.85472 0.77573 0.78948 0.79177 1.19672 1.20763 1.18788 1.65760 1.53441 1.03151 1.01975 1.22204 0.98352 0.92515 0.95671 1.23749 1.01131 0.99679 0.94521 1.23742 1.00554 0.94332 1.00028 1.22228 1.00046 0.97064 0.89337 0.91750 0.91228 0.90986 0.93454 0.92642 1.00259 0.98298 0.92972 0.92149 0.90704 0.82729 0.82281 0.90950 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.65 8.32 71.98 0.60 -4.05 16 2 C 0.07 2.55 2.35 44.91 0.11 2.66 16 3 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 4 C -0.09 -3.79 4.61 30.59 0.14 -3.65 16 5 C 0.04 2.17 4.86 29.85 0.15 2.31 16 6 C -0.54 -32.58 9.11 25.60 0.23 -32.34 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.93 -59.46 13.29 21.45 0.28 -59.18 16 10 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 14 N -0.52 -18.63 5.01 -871.16 -4.37 -23.00 16 15 C 0.04 1.25 5.43 85.43 0.46 1.71 16 16 C -0.17 -4.30 10.95 25.82 0.28 -4.02 16 17 C -0.17 -3.97 10.95 25.82 0.28 -3.69 16 18 C 0.04 1.14 6.42 85.43 0.55 1.69 16 19 H 0.06 1.65 6.16 -2.39 -0.01 1.63 16 20 H 0.07 1.60 5.95 -2.39 -0.01 1.59 16 21 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 22 H 0.05 2.02 7.37 -2.39 -0.02 2.00 16 23 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 24 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 25 H 0.00 -0.09 7.75 -2.38 -0.02 -0.11 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.12 5.14 -2.39 -0.01 2.11 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.07 1.79 5.70 -2.38 -0.01 1.77 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -68.73 256.71 2.28 -66.45 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.07 Total: 6.89 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.26 Total: -39.09 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -4.08 Total: -82.18 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -68.73 2.28 -66.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.701 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds