Wall clock time and date at job start Sun Mar 29 2020 21:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37100 * 120.00015 * 2 1 4 4 H 1.07997 * 120.00161 * 157.49109 * 3 2 1 5 5 C 1.38950 * 119.99654 * 337.77223 * 3 2 1 6 6 N 1.31415 * 120.00434 * 344.86143 * 5 3 2 7 7 Si 1.86800 * 119.99710 * 164.86870 * 5 3 2 8 8 H 1.48498 * 109.47471 * 59.99589 * 7 5 3 9 9 H 1.48505 * 109.47022 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47081 * 299.99386 * 7 5 3 11 11 C 1.34770 * 119.99891 * 179.97438 * 2 1 3 12 12 O 1.21296 * 120.00102 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00431 * 359.97438 * 11 2 1 14 14 H 1.09000 * 110.28687 * 40.70313 * 13 11 2 15 15 C 1.54680 * 110.32748 * 278.57420 * 13 11 2 16 16 C 1.54986 * 100.72668 * 217.20291 * 15 13 11 17 17 C 1.51259 * 103.82750 * 23.41173 * 16 15 13 18 18 N 1.27263 * 111.24309 * 344.15231 * 17 16 15 19 19 H 1.08997 * 109.47065 * 91.13452 * 1 2 3 20 20 H 1.09003 * 109.47067 * 211.13447 * 1 2 3 21 21 H 1.09001 * 109.46983 * 331.13377 * 1 2 3 22 22 H 0.96996 * 119.99974 * 180.02562 * 6 5 3 23 23 H 1.08998 * 111.14944 * 335.03074 * 15 13 11 24 24 H 1.09000 * 111.15052 * 99.25730 * 15 13 11 25 25 H 1.09002 * 110.47826 * 264.85176 * 16 15 13 26 26 H 1.09000 * 110.60038 * 142.03591 * 16 15 13 27 27 H 1.08002 * 124.37268 * 164.18451 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1688 1.2230 0.3580 5 6 1.5332 2.3459 -0.4552 6 7 0.4226 2.2679 -1.1534 7 14 2.2821 4.0144 -0.0749 8 1 3.6491 4.0864 -0.6506 9 1 1.4385 5.0826 -0.6689 10 1 2.3542 4.2009 1.3965 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3855 -2.4723 0.0017 14 1 0.5250 -2.4125 -0.6648 15 6 0.9301 -2.8285 1.4364 16 6 1.1194 -4.3668 1.4254 17 6 2.1463 -4.5970 0.3390 18 7 2.2691 -3.5712 -0.4042 19 1 -0.3633 -0.0203 -1.0274 20 1 -0.3633 -0.8797 0.5314 21 1 -0.3633 0.9000 0.4961 22 1 -0.0081 3.0767 -1.4715 23 1 1.5727 -2.3587 2.1810 24 1 -0.1143 -2.5603 1.5955 25 1 0.1818 -4.8646 1.1778 26 1 1.4957 -4.7137 2.3878 27 1 2.7029 -5.5135 0.2104 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187364896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:45 Heat of formation + Delta-G solvation = 0.548739 kcal Electronic energy + Delta-G solvation = -12475.949662 eV Core-core repulsion = 10234.676534 eV Total energy + Delta-G solvation = -2241.273128 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52923 -37.34293 -34.55645 -31.69144 -30.05625 -28.70616 -26.15155 -24.43447 -21.68644 -20.18700 -18.15516 -16.90913 -16.42146 -15.47008 -14.84360 -14.14077 -14.03313 -13.59385 -12.98764 -12.35659 -11.94355 -11.78517 -11.58768 -11.41912 -11.17408 -11.00063 -10.77589 -10.38135 -10.23869 -9.67366 -9.20621 -8.97813 -8.20764 -7.63960 -6.29543 -3.83626 2.58167 3.20892 3.26248 3.30656 3.83792 4.16380 4.57019 4.79457 4.86644 5.06476 5.23945 5.30613 5.56714 5.81590 5.89546 5.96030 6.04860 6.30881 6.36819 6.61602 6.84094 7.18595 7.59801 7.97737 8.18183 8.53289 9.22745 9.45244 10.03320 10.75586 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.072193 B = 0.009854 C = 0.009318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.758830 B = 2840.861899 C = 3004.334996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.447 5.447 3 C -0.307 4.307 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.463 3.537 12 O -0.574 6.574 13 C 0.030 3.970 14 H 0.103 0.897 15 C -0.139 4.139 16 C -0.147 4.147 17 C 0.106 3.894 18 N -0.455 5.455 19 H 0.053 0.947 20 H 0.026 0.974 21 H 0.072 0.928 22 H 0.268 0.732 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -8.733 4.844 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.167 5.167 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.200 1.200 11 C 0.249 3.751 12 O -0.457 6.457 13 C -0.083 4.083 14 H 0.121 0.879 15 C -0.179 4.179 16 C -0.186 4.186 17 C -0.110 4.110 18 N -0.161 5.161 19 H 0.072 0.928 20 H 0.045 0.955 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.297 -8.062 3.901 9.544 hybrid contribution -0.494 0.813 0.737 1.203 sum -3.791 -7.249 4.638 9.404 Atomic orbital electron populations 1.21517 0.81373 0.99341 1.01107 1.43519 1.05365 1.04530 1.63293 1.19593 0.99570 0.83622 1.40656 0.88476 1.25311 0.96680 1.00010 0.95288 1.70008 1.19337 1.29391 1.33470 0.85996 0.79012 0.80912 0.78762 1.19776 1.20956 1.19957 1.19524 0.87852 0.83893 0.83810 1.90516 1.13793 1.86715 1.54627 1.22892 0.95814 0.93724 0.95913 0.87905 1.23052 1.02501 0.95041 0.97295 1.22541 0.99584 0.96404 1.00101 1.26628 0.94580 0.97380 0.92387 1.72663 1.16398 1.00483 1.26539 0.92805 0.95536 0.90965 0.92238 0.90311 0.89716 0.89665 0.90007 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.18 59.85 0.49 3.01 15 2 N -0.45 -11.98 3.02 -122.19 -0.37 -12.35 15 3 C -0.31 -8.89 9.27 -14.93 -0.14 -9.02 15 4 H 0.10 2.95 7.42 -52.49 -0.39 2.56 15 5 C 0.03 0.82 5.01 -17.47 -0.09 0.73 15 6 N -0.88 -24.13 10.83 55.50 0.60 -23.53 15 7 Si 0.93 21.22 29.58 -169.99 -5.03 16.19 15 8 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 11 C 0.46 12.16 6.83 -10.99 -0.08 12.08 15 12 O -0.57 -17.40 16.27 5.54 0.09 -17.31 15 13 C 0.03 0.61 2.98 -68.07 -0.20 0.40 15 14 H 0.10 1.99 7.31 -51.93 -0.38 1.61 15 15 C -0.14 -2.22 6.19 -24.80 -0.15 -2.38 15 16 C -0.15 -1.79 6.90 -26.56 -0.18 -1.98 15 17 C 0.11 1.52 12.07 -13.90 -0.17 1.35 15 18 N -0.46 -9.06 10.61 -52.32 -0.56 -9.62 15 19 H 0.05 1.27 7.71 -51.93 -0.40 0.87 15 20 H 0.03 0.49 5.30 -51.93 -0.28 0.21 15 21 H 0.07 1.71 6.92 -51.93 -0.36 1.35 15 22 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 23 H 0.08 1.38 7.90 -51.93 -0.41 0.97 15 24 H 0.08 1.16 7.17 -51.93 -0.37 0.79 15 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.17 1.73 8.06 -52.49 -0.42 1.30 15 LS Contribution 231.44 15.07 3.49 3.49 Total: -1.00 -34.13 231.44 -5.28 -39.41 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.99 Total: -0.48 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.52 Total: 4.19 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.32 Total: -45.50 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.09 Total: -17.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -34.13 -5.28 -39.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187364896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.962 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds