Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36751 * 120.00491 * 2 1 4 4 H 1.08009 * 120.00012 * 214.91500 * 3 2 1 5 5 C 1.39127 * 119.99985 * 34.91790 * 3 2 1 6 6 N 1.31301 * 119.99888 * 5.20376 * 5 3 2 7 7 Si 1.86805 * 120.00214 * 185.21032 * 5 3 2 8 8 H 1.48502 * 109.46936 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47102 * 119.99234 * 7 5 3 10 10 H 1.48500 * 109.46994 * 239.99863 * 7 5 3 11 11 C 1.34780 * 119.99793 * 180.02562 * 2 1 3 12 12 O 1.21544 * 119.99668 * 5.45306 * 11 2 1 13 13 C 1.48273 * 120.00346 * 185.44305 * 11 2 1 14 14 N 1.35265 * 126.41776 * 175.12594 * 13 11 2 15 15 C 1.30921 * 105.58160 * 180.02562 * 14 13 11 16 16 O 1.33700 * 107.13278 * 0.02562 * 15 14 13 17 17 N 1.21288 * 110.02449 * 0.02562 * 16 15 14 18 18 H 1.08999 * 109.47351 * 265.00689 * 1 2 3 19 19 H 1.09005 * 109.47036 * 24.99595 * 1 2 3 20 20 H 1.08991 * 109.47893 * 144.99854 * 1 2 3 21 21 H 0.97000 * 120.00134 * 180.02562 * 6 5 3 22 22 H 1.08003 * 126.43276 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1488 1.1842 0.0000 4 1 3.0831 1.2683 -0.5354 5 6 1.6411 2.2807 0.6897 6 7 0.5602 2.1515 1.4238 7 14 2.4971 3.9368 0.5712 8 1 3.6847 3.8181 -0.3125 9 1 1.5585 4.9399 0.0074 10 1 2.9290 4.3688 1.9247 11 6 2.1388 -1.1673 -0.0005 12 8 1.5351 -2.2174 -0.1010 13 6 3.6165 -1.1703 0.1213 14 7 4.4112 -2.2598 0.2274 15 6 5.6330 -1.7969 0.3113 16 8 5.5537 -0.4634 0.2559 17 7 4.3954 -0.1204 0.1482 18 1 -0.3634 -0.0894 1.0237 19 1 -0.3633 0.9315 -0.4343 20 1 -0.3634 -0.8417 -0.5894 21 1 0.2060 2.9160 1.9043 22 1 6.5355 -2.3824 0.4072 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192017756.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = 53.593506 kcal Electronic energy + Delta-G solvation = -12451.974783 eV Core-core repulsion = 10011.742844 eV Total energy + Delta-G solvation = -2440.231939 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.92204 -38.45100 -35.18973 -34.66661 -31.96092 -31.42404 -26.92427 -25.30522 -23.46091 -23.18268 -19.86471 -18.42028 -17.49283 -16.30311 -16.22723 -14.87972 -14.47134 -14.24046 -13.97142 -12.90615 -12.05060 -11.93334 -11.45157 -11.29936 -11.03781 -10.98377 -10.74422 -10.39331 -10.24889 -9.52495 -9.22788 -8.90666 -7.78343 -6.53553 -4.18080 1.70097 2.45030 3.08919 3.15774 3.22223 3.53622 3.83532 4.11609 4.20632 4.80350 4.97312 5.25063 5.87100 6.20001 6.50320 6.71674 6.83640 7.17318 7.36878 7.65080 8.27815 8.71622 8.93169 9.28765 9.67722 10.49515 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.035657 B = 0.016249 C = 0.011554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.072641 B = 1722.791250 C = 2422.810057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.410 5.410 3 C -0.332 4.332 4 H 0.113 0.887 5 C 0.045 3.955 6 N -0.859 5.859 7 Si 0.928 3.072 8 H -0.263 1.263 9 H -0.278 1.278 10 H -0.278 1.278 11 C 0.525 3.475 12 O -0.584 6.584 13 C 0.160 3.840 14 N -0.456 5.456 15 C 0.127 3.873 16 O 0.067 5.933 17 N -0.324 5.324 18 H 0.058 0.942 19 H 0.070 0.930 20 H 0.041 0.959 21 H 0.273 0.727 22 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.517 -0.265 -1.239 7.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.128 5.128 3 C -0.462 4.462 4 H 0.131 0.869 5 C -0.163 4.163 6 N -0.496 5.496 7 Si 0.754 3.246 8 H -0.186 1.186 9 H -0.204 1.204 10 H -0.203 1.203 11 C 0.311 3.689 12 O -0.468 6.468 13 C -0.112 4.112 14 N -0.189 5.189 15 C -0.114 4.114 16 O 0.005 5.995 17 N -0.033 5.033 18 H 0.076 0.924 19 H 0.088 0.912 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 6.374 -0.172 -1.245 6.496 hybrid contribution 0.719 0.792 0.212 1.090 sum 7.093 0.620 -1.033 7.194 Atomic orbital electron populations 1.21403 0.79326 1.00077 1.01357 1.43371 1.06083 1.04300 1.59042 1.20148 1.07742 0.87043 1.31244 0.86938 1.25592 0.96056 1.00746 0.93883 1.69915 1.20875 1.31952 1.26832 0.85828 0.79587 0.80626 0.78594 1.18640 1.20390 1.20347 1.16562 0.81900 0.84726 0.85705 1.90656 1.67291 1.31344 1.57509 1.25813 0.99251 0.82737 1.03431 1.71937 1.00241 1.29592 1.17169 1.30358 0.99033 0.83010 0.99043 1.85365 1.24462 1.25103 1.64552 1.75505 0.88663 1.22055 1.17044 0.92353 0.91155 0.94035 0.91631 0.72833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.99 8.70 59.84 0.52 3.51 14 2 N -0.41 -11.05 2.97 -123.14 -0.37 -11.41 14 3 C -0.33 -8.81 8.12 -15.03 -0.12 -8.93 14 4 H 0.11 2.96 5.76 -52.48 -0.30 2.66 14 5 C 0.05 1.15 5.18 -17.45 -0.09 1.06 14 6 N -0.86 -22.61 11.14 55.50 0.62 -21.99 14 7 Si 0.93 19.87 29.56 -169.99 -5.02 14.85 14 8 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 9 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 14 11 C 0.53 14.27 7.65 -12.13 -0.09 14.18 14 12 O -0.58 -16.86 16.73 5.33 0.09 -16.77 14 13 C 0.16 3.85 7.75 -156.15 -1.21 2.64 14 14 N -0.46 -9.46 11.57 -13.77 -0.16 -9.62 14 15 C 0.13 1.86 13.38 52.04 0.70 2.55 14 16 O 0.07 1.16 11.29 17.96 0.20 1.36 14 17 N -0.32 -7.22 8.95 30.93 0.28 -6.94 14 18 H 0.06 1.48 7.73 -51.93 -0.40 1.08 14 19 H 0.07 1.70 7.29 -51.93 -0.38 1.32 14 20 H 0.04 0.97 7.50 -51.93 -0.39 0.58 14 21 H 0.27 6.71 8.31 -40.82 -0.34 6.37 14 22 H 0.26 1.83 8.06 -52.48 -0.42 1.40 14 LS Contribution 208.96 15.07 3.15 3.15 Total: -1.00 -32.52 208.96 -2.54 -35.06 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -1.03 Total: -2.69 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -0.30 Total: 15.01 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.37 Total: -49.97 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.29 Total: -15.41 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -32.52 -2.54 -35.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192017756.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.653 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds