Wall clock time and date at job start Sun Mar 29 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99784 * 2 1 4 4 C 1.50691 * 109.47343 * 66.04047 * 3 2 1 5 5 H 1.08003 * 120.00084 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00190 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00220 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99940 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47377 * 89.99360 * 8 6 4 10 10 H 1.48495 * 109.47085 * 209.99734 * 8 6 4 11 11 H 1.48509 * 109.46807 * 329.99763 * 8 6 4 12 12 C 1.46899 * 111.00148 * 236.04188 * 2 1 3 13 13 C 1.50690 * 109.47103 * 293.95368 * 12 2 1 14 14 C 1.35351 * 126.91729 * 264.95654 * 13 12 2 15 15 N 1.33769 * 106.50107 * 180.02562 * 14 13 12 16 16 N 1.28629 * 108.88659 * 359.97438 * 15 14 13 17 17 N 1.28714 * 110.17964 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.86941 * 179.73092 * 17 16 15 19 19 H 1.09005 * 109.47246 * 183.95008 * 1 2 3 20 20 H 1.08998 * 109.47546 * 303.95586 * 1 2 3 21 21 H 1.09000 * 109.46893 * 63.95960 * 1 2 3 22 22 H 1.08997 * 109.46855 * 186.04944 * 3 2 1 23 23 H 1.09005 * 109.46754 * 306.03832 * 3 2 1 24 24 H 0.96999 * 120.00412 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.46973 * 173.95461 * 12 2 1 26 26 H 1.09008 * 109.46951 * 53.95717 * 12 2 1 27 27 H 1.08004 * 126.74797 * 0.05551 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2983 5 1 1.0744 1.5114 2.0487 6 6 2.0275 3.3493 1.5287 7 7 1.7141 3.9392 2.6616 8 14 3.0007 4.2759 0.2312 9 1 2.0642 4.9803 -0.6809 10 1 3.8878 5.2669 0.8917 11 1 3.8240 3.3170 -0.5487 12 6 1.9955 -0.7661 -1.1375 13 6 1.6370 -2.2204 -0.9727 14 6 2.4074 -3.1910 -0.4283 15 7 1.6938 -4.3208 -0.4881 16 7 0.5566 -4.0667 -1.0329 17 7 0.4801 -2.8189 -1.3394 18 1 -0.2755 -2.3833 -1.7640 19 1 -0.3634 -1.0253 0.0708 20 1 -0.3634 0.5740 0.8524 21 1 -0.3633 0.4512 -0.9234 22 1 3.0797 1.3445 -0.1083 23 1 1.5611 1.9273 -0.8310 24 1 1.9892 4.8550 2.8239 25 1 3.0797 -0.6612 -1.1755 26 1 1.5611 -0.3873 -2.0628 27 1 3.4025 -3.0757 -0.0245 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203195577.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:07 Heat of formation + Delta-G solvation = 101.831536 kcal Electronic energy + Delta-G solvation = -12119.460432 eV Core-core repulsion = 9914.872007 eV Total energy + Delta-G solvation = -2204.588425 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.14504 -37.05285 -33.26481 -32.68765 -31.41551 -28.08431 -27.05415 -23.99162 -22.77853 -21.61754 -20.47687 -18.05130 -16.92306 -16.09795 -15.01575 -14.73666 -14.38432 -14.01448 -13.84145 -12.78751 -12.46507 -12.20348 -11.65635 -11.41800 -11.26162 -10.83123 -10.81894 -10.46913 -10.40244 -9.97008 -9.43017 -9.05275 -8.67572 -7.66584 -6.14399 -4.13418 1.68298 2.70547 2.85832 3.20371 3.28634 3.29422 4.32502 4.55607 4.75627 4.84194 5.15768 5.19029 5.51869 5.64162 5.77239 5.80541 5.98365 6.29592 6.44867 6.64480 6.78340 6.91627 7.40768 7.64205 7.79233 8.51600 8.56982 8.93452 9.45639 10.98525 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.072229 B = 0.008031 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.561821 B = 3485.629667 C = 3580.485718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.525 5.525 3 C 0.163 3.837 4 C -0.514 4.514 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.117 3.883 13 C 0.015 3.985 14 C -0.038 4.038 15 N -0.271 5.271 16 N -0.093 5.093 17 N -0.392 5.392 18 H 0.444 0.556 19 H 0.041 0.959 20 H 0.088 0.912 21 H 0.015 0.985 22 H 0.033 0.967 23 H -0.013 1.013 24 H 0.265 0.735 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 -7.520 -9.692 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.249 5.249 3 C 0.037 3.963 4 C -0.552 4.552 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.191 1.191 12 C -0.013 4.013 13 C -0.120 4.120 14 C -0.195 4.195 15 N -0.138 5.138 16 N -0.073 5.073 17 N -0.113 5.113 18 H 0.289 0.711 19 H 0.060 0.940 20 H 0.106 0.894 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.005 0.995 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.058 0.942 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.642 -9.013 -9.096 12.822 hybrid contribution 0.252 2.402 -1.539 2.864 sum -0.390 -6.611 -10.635 12.529 Atomic orbital electron populations 1.22352 0.88291 0.99652 1.01541 1.62006 1.07454 1.16850 1.38588 1.20238 0.95496 0.83100 0.97448 1.20978 1.36099 0.97300 1.00872 0.90075 1.24895 0.95657 0.97308 0.95349 1.69882 1.46481 1.13325 1.23872 0.86857 0.80612 0.80140 0.82072 1.20355 1.21029 1.19109 1.20650 1.01923 0.85148 0.93577 1.22366 0.87633 0.98180 1.03788 1.23368 1.02754 0.88353 1.05074 1.75037 0.98919 1.25240 1.14615 1.78201 1.16370 0.96312 1.16440 1.45154 1.15351 1.08120 1.42704 0.71107 0.94041 0.89355 0.96665 0.94870 0.99521 0.92504 0.87949 0.94198 0.79233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.18 60.06 0.55 1.07 15 2 N -0.52 -9.92 4.74 -245.83 -1.17 -11.09 15 3 C 0.16 3.63 3.79 -4.98 -0.02 3.61 15 4 C -0.51 -13.91 9.01 -34.44 -0.31 -14.22 15 5 H 0.08 2.42 7.37 -52.48 -0.39 2.03 15 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 7 N -0.90 -26.67 13.96 55.43 0.77 -25.90 15 8 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.27 -5.86 6.54 56.52 0.37 -5.50 15 12 C 0.12 1.70 5.53 -4.98 -0.03 1.67 15 13 C 0.01 0.20 6.01 -82.09 -0.49 -0.29 15 14 C -0.04 -0.56 11.99 -17.74 -0.21 -0.77 15 15 N -0.27 -4.44 12.41 30.24 0.38 -4.06 15 16 N -0.09 -1.43 13.38 60.35 0.81 -0.62 15 17 N -0.39 -5.06 6.09 33.54 0.20 -4.85 15 18 H 0.44 4.25 8.80 -190.40 -1.68 2.57 15 19 H 0.04 0.63 6.44 -51.93 -0.33 0.30 15 20 H 0.09 1.77 6.76 -51.93 -0.35 1.42 15 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 15 22 H 0.03 0.74 6.99 -51.93 -0.36 0.37 15 23 H -0.01 -0.28 7.55 -51.93 -0.39 -0.67 15 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.10 1.38 7.93 -51.93 -0.41 0.96 15 26 H 0.04 0.52 8.12 -51.92 -0.42 0.09 15 27 H 0.19 2.31 8.06 -52.48 -0.42 1.89 15 LS Contribution 234.25 15.07 3.53 3.53 Total: -1.00 -31.13 234.25 -5.10 -36.23 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.35 Total: -1.90 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.61 Total: -7.08 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.99 Total: -46.53 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.13 -5.10 -36.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203195577.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.061 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds