Wall clock time and date at job start Sun Mar 29 2020 22:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47019 * 264.53637 * 3 2 1 5 5 H 1.48498 * 109.47239 * 24.53825 * 3 2 1 6 6 H 1.48499 * 109.47023 * 144.53629 * 3 2 1 7 7 C 1.38816 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99785 * 337.63410 * 7 2 1 9 9 N 1.36931 * 120.00163 * 157.35526 * 7 2 1 10 10 C 1.47419 * 125.64869 * 341.87998 * 9 7 2 11 11 C 1.54909 * 104.83488 * 204.09197 * 10 9 7 12 12 C 1.55161 * 101.57682 * 322.98754 * 11 10 9 13 13 H 1.09003 * 110.72209 * 276.95954 * 12 11 10 14 14 O 1.42899 * 110.71784 * 153.86694 * 12 11 10 15 15 C 1.42906 * 114.00070 * 150.00016 * 14 12 11 16 16 C 1.52995 * 117.50053 * 218.61921 * 15 14 12 17 17 C 1.52992 * 60.00006 * 252.51399 * 16 15 14 18 18 C 1.47017 * 125.64699 * 161.56674 * 9 7 2 19 19 H 0.97003 * 119.99862 * 0.02562 * 1 2 3 20 20 H 1.09006 * 110.36531 * 322.92707 * 10 9 7 21 21 H 1.08995 * 110.37167 * 85.13837 * 10 9 7 22 22 H 1.09001 * 111.00992 * 81.05838 * 11 10 9 23 23 H 1.09004 * 111.00543 * 204.92074 * 11 10 9 24 24 H 1.08997 * 115.54921 * 4.32746 * 15 14 12 25 25 H 1.09004 * 117.49439 * 0.02562 * 16 15 14 26 26 H 1.08999 * 117.49966 * 145.01615 * 16 15 14 27 27 H 1.09005 * 117.49655 * 252.50852 * 17 16 15 28 28 H 1.09003 * 117.52438 * 107.49017 * 17 16 15 29 29 H 1.09001 * 109.88793 * 298.39597 * 18 9 7 30 30 H 1.08999 * 109.88669 * 59.56379 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9797 -1.3937 5 1 1.3948 2.6832 0.5814 6 1 3.4852 1.4762 0.8123 7 6 2.0102 -1.2022 0.0005 8 1 1.5311 -2.1021 0.3569 9 7 3.3004 -1.2481 -0.4560 10 6 3.9477 -0.2324 -1.3060 11 6 5.0890 -0.9896 -2.0297 12 6 5.5754 -1.9562 -0.9177 13 1 6.2739 -1.4539 -0.2484 14 8 6.1738 -3.1221 -1.4875 15 6 7.1985 -3.7038 -0.6789 16 6 8.4311 -4.2613 -1.3935 17 6 7.4051 -5.2163 -0.7804 18 6 4.2714 -2.3155 -0.1744 19 1 -0.4850 0.8401 -0.0004 20 1 3.2368 0.1648 -2.0306 21 1 4.3532 0.5726 -0.6932 22 1 4.7081 -1.5422 -2.8886 23 1 5.8837 -0.3059 -2.3281 24 1 7.3485 -3.2396 0.2958 25 1 8.4606 -4.1840 -2.4804 26 1 9.3924 -4.1638 -0.8890 27 1 7.6913 -5.7472 0.1275 28 1 6.7592 -5.7679 -1.4636 29 1 4.4577 -2.3737 0.8980 30 1 3.8900 -3.2693 -0.5387 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205468789.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:23 Heat of formation + Delta-G solvation = -8.156013 kcal Electronic energy + Delta-G solvation = -12628.352802 eV Core-core repulsion = 10424.816641 eV Total energy + Delta-G solvation = -2203.536161 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17876 -38.41680 -35.73325 -34.19432 -31.38717 -29.49514 -26.14144 -23.25788 -23.07413 -22.59868 -21.81433 -19.06005 -18.23198 -17.22866 -16.48150 -16.22394 -15.36141 -15.34319 -14.61229 -14.33122 -14.05769 -13.80867 -13.32915 -13.03799 -12.87276 -12.37644 -12.32836 -12.14765 -11.87709 -11.61276 -11.45995 -11.28554 -10.84430 -10.02403 -9.10961 -8.20868 -5.49088 1.30230 1.38433 1.48201 2.39809 2.44461 2.95877 2.99880 3.35452 3.70011 3.81811 3.92567 4.07341 4.15196 4.23128 4.32391 4.52565 4.66088 4.75577 4.79218 4.93124 4.96156 5.00942 5.06754 5.18237 5.27657 5.62678 6.06078 6.34851 6.71083 7.49030 8.04726 8.98993 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.072482 B = 0.008684 C = 0.008145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.211432 B = 3223.696756 C = 3437.047143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.037 4.037 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.304 1.304 6 H -0.266 1.266 7 C -0.244 4.244 8 H 0.054 0.946 9 N -0.627 5.627 10 C 0.102 3.898 11 C -0.115 4.115 12 C 0.093 3.907 13 H 0.097 0.903 14 O -0.359 6.359 15 C -0.010 4.010 16 C -0.176 4.176 17 C -0.187 4.187 18 C 0.112 3.888 19 H 0.264 0.736 20 H 0.046 0.954 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.110 0.890 24 H 0.124 0.876 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.463 -4.113 -2.213 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.233 1.233 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.072 0.928 9 N -0.355 5.355 10 C -0.022 4.022 11 C -0.153 4.153 12 C 0.035 3.965 13 H 0.115 0.885 14 O -0.277 6.277 15 C -0.067 4.067 16 C -0.213 4.213 17 C -0.224 4.224 18 C -0.013 4.013 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.128 0.872 24 H 0.141 0.859 25 H 0.113 0.887 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 18.203 -4.128 -2.366 18.815 hybrid contribution -0.497 0.670 0.411 0.930 sum 17.707 -3.457 -1.955 18.147 Atomic orbital electron populations 1.69982 1.07325 1.27511 1.55404 1.25695 0.95898 1.01085 1.00511 0.85878 0.77877 0.79543 0.78871 1.18982 1.23264 1.19072 1.18575 0.86391 0.94476 1.37806 0.92802 1.44766 1.09479 1.23779 1.57481 1.22115 0.94526 0.92582 0.92983 1.22808 0.97623 0.97505 0.97396 1.23087 0.92726 0.85561 0.95167 0.88547 1.87840 1.52015 1.43005 1.44886 1.23109 0.91858 0.95680 0.96076 1.23449 0.94229 1.02512 1.01074 1.23405 1.02622 0.92248 1.04141 1.21941 0.90044 0.91713 0.97638 0.92676 0.93589 0.94740 0.90728 0.87202 0.85860 0.88749 0.85974 0.86364 0.89357 0.94678 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.64 13.97 21.65 0.30 -61.33 16 2 C -0.04 -2.25 5.43 84.86 0.46 -1.79 16 3 Si 0.95 47.06 24.27 68.60 1.66 48.72 16 4 H -0.26 -12.14 6.48 99.48 0.64 -11.50 16 5 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 6 H -0.27 -12.52 6.66 99.48 0.66 -11.86 16 7 C -0.24 -14.70 10.57 84.04 0.89 -13.81 16 8 H 0.05 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.63 -31.59 3.21 -691.99 -2.22 -33.81 16 10 C 0.10 4.37 4.69 86.86 0.41 4.78 16 11 C -0.12 -3.79 6.81 31.99 0.22 -3.57 16 12 C 0.09 2.99 3.39 31.79 0.11 3.10 16 13 H 0.10 2.62 7.61 -2.39 -0.02 2.60 16 14 O -0.36 -11.05 10.33 -148.98 -1.54 -12.59 16 15 C -0.01 -0.22 6.37 30.59 0.19 -0.03 16 16 C -0.18 -3.16 10.48 30.59 0.32 -2.84 16 17 C -0.19 -3.73 10.48 30.59 0.32 -3.41 16 18 C 0.11 4.65 7.03 86.73 0.61 5.26 16 19 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 20 H 0.05 2.11 6.61 -2.38 -0.02 2.09 16 21 H 0.04 1.45 5.58 -2.39 -0.01 1.43 16 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 24 H 0.12 2.46 7.68 -2.39 -0.02 2.44 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.03 1.18 8.05 -2.39 -0.02 1.16 16 Total: -1.00 -69.51 246.18 2.73 -66.77 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.00 Total: 4.55 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 3.53 Total: -12.31 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -1.92 Total: -95.14 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.54 Total: -12.59 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.66 Total: 48.72 kcal Total: -69.51 2.73 -66.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205468789.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.617 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds