Wall clock time and date at job start Sun Mar 29 2020 21:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47507 * 180.02562 * 10 9 7 12 12 C 1.42898 * 114.00600 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.35007 * 330.27294 * 12 11 10 14 14 C 1.50067 * 109.35886 * 89.99498 * 12 11 10 15 15 C 1.29450 * 124.07324 * 137.32449 * 14 12 11 16 16 C 1.50063 * 124.07241 * 359.54515 * 15 14 12 17 17 C 1.53018 * 110.15073 * 17.14183 * 16 15 14 18 18 C 1.53027 * 109.36023 * 210.69116 * 12 11 10 19 19 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 21 21 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 22 22 H 1.09002 * 109.46997 * 300.00438 * 10 9 7 23 23 H 1.08998 * 109.47088 * 60.00229 * 10 9 7 24 24 H 1.07993 * 117.96295 * 317.34179 * 14 12 11 25 25 H 1.08002 * 117.95845 * 179.53223 * 15 14 12 26 26 H 1.09010 * 109.35282 * 137.34258 * 16 15 14 27 27 H 1.08997 * 109.36475 * 256.92571 * 16 15 14 28 28 H 1.08994 * 109.64698 * 70.24192 * 17 16 15 29 29 H 1.09000 * 109.64194 * 190.66407 * 17 16 15 30 30 H 1.08999 * 109.63700 * 310.03165 * 18 12 11 31 31 H 1.08993 * 109.64165 * 70.66957 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 8 1.5309 -4.8996 0.0020 12 6 2.3708 -6.0557 0.0024 13 1 3.3056 -5.8232 -0.5078 14 6 2.6633 -6.4575 1.4183 15 6 2.6538 -7.6808 1.8418 16 6 2.3393 -8.8670 0.9781 17 6 2.4566 -8.4888 -0.4999 18 6 1.6645 -7.1961 -0.7341 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6248 -2.5563 0.8920 21 1 0.6242 -2.5575 -0.8880 22 1 2.8714 -3.6046 -0.8890 23 1 2.8727 -3.6039 0.8909 24 1 2.8960 -5.6777 2.1282 25 1 2.8869 -7.8586 2.8812 26 1 3.0392 -9.6723 1.2016 27 1 1.3241 -9.2056 1.1850 28 1 3.5040 -8.3283 -0.7551 29 1 2.0478 -9.2893 -1.1165 30 1 0.6524 -7.3113 -0.3462 31 1 1.6286 -6.9764 -1.8010 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205630781.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:54 Heat of formation + Delta-G solvation = -79.379683 kcal Electronic energy + Delta-G solvation = -12109.093208 eV Core-core repulsion = 9967.894467 eV Total energy + Delta-G solvation = -2141.198741 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18662 -37.73252 -35.68306 -32.16814 -31.95377 -30.10111 -26.30856 -23.83194 -23.61012 -22.91094 -19.19701 -18.91204 -17.78548 -17.08227 -16.43743 -15.74894 -15.53659 -14.80988 -14.53245 -14.26797 -13.72507 -13.71233 -13.43192 -13.06904 -12.86359 -12.44717 -12.15144 -11.93096 -11.74337 -11.55950 -11.45809 -10.86043 -10.63217 -10.43062 -10.02192 -8.77697 -6.49122 1.21093 1.52163 1.62397 1.80400 2.52245 2.88916 3.09969 3.69558 3.78922 4.02300 4.20234 4.21490 4.22667 4.37410 4.41248 4.55901 4.67649 4.76890 4.88173 4.97852 5.04541 5.08835 5.24720 5.30026 5.34288 5.63518 5.81743 5.91471 6.08019 6.33485 6.45187 7.35279 8.63736 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.086366 B = 0.006157 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.124078 B = 4546.346595 C = 4629.339383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.038 4.038 3 Si 1.128 2.872 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.623 4.623 8 H 0.058 0.942 9 C 0.012 3.988 10 C 0.092 3.908 11 O -0.406 6.406 12 C 0.107 3.893 13 H 0.066 0.934 14 C -0.203 4.203 15 C -0.131 4.131 16 C -0.094 4.094 17 C -0.111 4.111 18 C -0.115 4.115 19 H 0.254 0.746 20 H -0.010 1.010 21 H -0.008 1.008 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 -16.541 0.528 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.235 4.235 3 Si 0.947 3.053 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.206 1.206 7 C -0.660 4.660 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.016 3.984 11 O -0.326 6.326 12 C 0.050 3.950 13 H 0.084 0.916 14 C -0.222 4.222 15 C -0.149 4.149 16 C -0.131 4.131 17 C -0.149 4.149 18 C -0.153 4.153 19 H 0.064 0.936 20 H 0.008 0.992 21 H 0.011 0.989 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.137 0.863 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.959 -14.941 0.534 16.491 hybrid contribution 0.056 -1.346 0.206 1.363 sum 7.015 -16.288 0.740 17.750 Atomic orbital electron populations 1.70878 1.08081 1.29901 1.48172 1.27657 0.96538 1.07115 0.92172 0.82822 0.74090 0.70281 0.78068 1.19382 1.19056 1.20596 1.22323 0.94924 0.92555 1.56245 0.92349 1.19119 0.95309 0.93343 0.94748 1.22333 0.94451 0.82704 0.98915 1.87939 1.35314 1.14219 1.95107 1.21116 0.93857 0.86144 0.93864 0.91627 1.22534 1.03927 0.98023 0.97678 1.22366 0.97904 0.94030 1.00615 1.20607 1.03091 0.95929 0.93466 1.21610 1.00499 0.95877 0.96865 1.21689 0.99841 0.93820 0.99959 0.93618 0.99202 0.98942 0.93643 0.94120 0.89414 0.86327 0.88398 0.89812 0.91205 0.88784 0.91833 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.03 13.65 21.45 0.29 -59.74 16 2 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 3 Si 1.13 50.85 29.90 68.60 2.05 52.90 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.62 -37.16 9.11 25.60 0.23 -36.93 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.01 0.69 4.65 29.85 0.14 0.82 16 10 C 0.09 4.31 5.67 71.98 0.41 4.72 16 11 O -0.41 -17.61 9.96 -148.98 -1.48 -19.09 16 12 C 0.11 3.52 2.86 29.66 0.08 3.60 16 13 H 0.07 2.06 7.78 -2.38 -0.02 2.04 16 14 C -0.20 -6.09 9.37 27.03 0.25 -5.84 16 15 C -0.13 -3.00 9.80 27.03 0.26 -2.74 16 16 C -0.09 -1.62 6.11 29.65 0.18 -1.43 16 17 C -0.11 -2.02 6.01 30.74 0.18 -1.83 16 18 C -0.12 -3.02 5.66 30.74 0.17 -2.85 16 19 H 0.25 16.79 7.22 -92.71 -0.67 16.12 16 20 H -0.01 -0.64 8.01 -2.39 -0.02 -0.65 16 21 H -0.01 -0.47 8.01 -2.39 -0.02 -0.49 16 22 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.09 2.87 8.06 -2.91 -0.02 2.84 16 25 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 26 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.77 8.12 -2.39 -0.02 1.76 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.40 259.46 4.42 -64.99 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.17 Total: 5.20 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 2.39 Total: -44.25 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.29 Total: -59.74 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.48 Total: -19.09 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -69.40 4.42 -64.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205630781.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.394 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds