Wall clock time and date at job start Sun Mar 29 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46747 * 179.97438 * 10 9 7 12 12 C 1.42900 * 113.99701 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.36092 * 29.99879 * 12 11 10 14 14 C 1.50076 * 109.35921 * 270.27788 * 12 11 10 15 15 C 1.29443 * 124.07471 * 222.68802 * 14 12 11 16 16 C 1.50062 * 124.07468 * 0.44209 * 15 14 12 17 17 C 1.53025 * 110.15246 * 342.87015 * 16 15 14 18 18 C 1.53026 * 109.35820 * 149.72526 * 12 11 10 19 19 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 21 21 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 22 22 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 23 23 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 24 24 H 1.08001 * 117.95790 * 42.66083 * 14 12 11 25 25 H 1.08004 * 117.96078 * 180.46706 * 15 14 12 26 26 H 1.09000 * 109.35594 * 103.07939 * 16 15 14 27 27 H 1.09005 * 109.35765 * 222.66194 * 16 15 14 28 28 H 1.08997 * 109.64313 * 169.11989 * 17 16 15 29 29 H 1.08997 * 109.64009 * 289.54238 * 17 16 15 30 30 H 1.09001 * 109.63908 * 289.32688 * 18 12 11 31 31 H 1.08998 * 109.64051 * 49.95963 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0009 12 6 6.0319 -3.9419 0.0014 13 1 5.3652 -4.6344 -0.5125 14 6 6.2280 -4.3986 1.4175 15 6 7.2904 -5.0025 1.8442 16 6 8.4784 -5.3219 0.9847 17 6 8.0982 -5.2318 -0.4948 18 6 7.3772 -3.8984 -0.7265 19 1 -0.4850 0.8400 -0.0004 20 1 3.8753 -0.6803 -0.8889 21 1 3.8746 -0.6799 0.8911 22 1 3.6579 -3.1505 0.8908 23 1 3.6587 -3.1502 -0.8892 24 1 5.4334 -4.2114 2.1245 25 1 7.3238 -5.2951 2.8833 26 1 9.2784 -4.6123 1.1960 27 1 8.8250 -6.3309 1.2079 28 1 8.9986 -5.2732 -1.1077 29 1 7.4396 -6.0604 -0.7549 30 1 7.2116 -3.7546 -1.7942 31 1 7.9806 -3.0805 -0.3327 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205630782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:56 Heat of formation + Delta-G solvation = -52.607569 kcal Electronic energy + Delta-G solvation = -12121.356029 eV Core-core repulsion = 9981.318215 eV Total energy + Delta-G solvation = -2140.037815 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92694 -36.30629 -33.13075 -31.04861 -30.72884 -29.00477 -24.70979 -22.65965 -22.27013 -20.52685 -17.94825 -17.11837 -16.35268 -15.49053 -14.80645 -14.43868 -14.12993 -13.26426 -13.08940 -12.75046 -12.68418 -12.48290 -11.91593 -11.40243 -11.24244 -11.00094 -10.66819 -10.55642 -10.12826 -9.90014 -9.79748 -9.24877 -9.02635 -8.84371 -8.54364 -6.06772 -4.06192 2.30871 3.33187 3.39960 3.47082 4.29155 4.45593 4.72094 4.78101 5.06491 5.27804 5.30069 5.33634 5.45216 5.52193 5.69114 5.77878 5.83590 5.95488 6.13369 6.17942 6.30903 6.33698 6.67367 6.70305 6.96161 7.15085 7.39470 7.70310 7.94096 8.48384 8.95440 9.54834 11.06157 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.072811 B = 0.006689 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.465671 B = 4185.064018 C = 4276.917068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.009 4.009 10 C 0.075 3.925 11 O -0.384 6.384 12 C 0.116 3.884 13 H 0.065 0.935 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.091 4.091 17 C -0.117 4.117 18 C -0.116 4.116 19 H 0.264 0.736 20 H 0.020 0.980 21 H 0.024 0.976 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.504 -9.385 0.543 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.213 1.213 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.001 4.001 11 O -0.304 6.304 12 C 0.058 3.942 13 H 0.083 0.917 14 C -0.182 4.182 15 C -0.177 4.177 16 C -0.128 4.128 17 C -0.155 4.155 18 C -0.153 4.153 19 H 0.074 0.926 20 H 0.038 0.962 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.440 -9.094 0.550 17.928 hybrid contribution 0.010 0.643 0.174 0.666 sum 15.450 -8.452 0.724 17.626 Atomic orbital electron populations 1.69907 1.06291 1.27064 1.50785 1.24958 0.94743 0.99209 0.94272 0.86749 0.80470 0.83290 0.78694 1.20139 1.18760 1.21300 1.20950 0.88840 0.94752 1.51638 0.90937 1.19538 0.96539 0.91163 0.97445 1.22697 0.77703 1.00731 0.98987 1.87974 1.21950 1.25564 1.94891 1.20792 0.94764 0.86299 0.92343 0.91688 1.22716 0.98572 0.98376 0.98523 1.21979 0.95152 1.01063 0.99472 1.20465 0.96642 1.01381 0.94290 1.21589 1.00292 0.97531 0.96083 1.21631 0.95391 0.97857 1.00461 0.92594 0.96188 0.95777 0.94105 0.94050 0.87570 0.88077 0.90954 0.91342 0.91369 0.91681 0.91188 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 10 C 0.07 1.61 5.67 37.16 0.21 1.82 16 11 O -0.38 -7.66 9.96 -35.23 -0.35 -8.01 16 12 C 0.12 1.82 2.87 -28.17 -0.08 1.74 16 13 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 14 C -0.16 -2.39 9.37 -35.90 -0.34 -2.72 16 15 C -0.16 -1.93 9.80 -35.90 -0.35 -2.28 16 16 C -0.09 -0.91 6.11 -28.18 -0.17 -1.08 16 17 C -0.12 -1.20 6.01 -26.54 -0.16 -1.36 16 18 C -0.12 -1.50 5.64 -26.54 -0.15 -1.65 16 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 20 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 21 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 24 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.10 1.09 8.06 -52.48 -0.42 0.67 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 257.16 15.07 3.88 3.88 Total: -1.00 -31.06 257.16 -6.94 -38.01 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -4.98 Total: -4.59 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.59 Total: -19.56 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.35 Total: -8.01 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.06 -6.94 -38.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205630782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.601 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds