Wall clock time and date at job start Sun Mar 29 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46747 * 179.97438 * 10 9 7 12 12 C 1.42900 * 113.99701 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.36092 * 29.99879 * 12 11 10 14 14 C 1.50076 * 109.35921 * 270.27788 * 12 11 10 15 15 C 1.29443 * 124.07471 * 222.68802 * 14 12 11 16 16 C 1.50062 * 124.07468 * 0.44209 * 15 14 12 17 17 C 1.53025 * 110.15246 * 342.87015 * 16 15 14 18 18 C 1.53026 * 109.35820 * 149.72526 * 12 11 10 19 19 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 21 21 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 22 22 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 23 23 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 24 24 H 1.08001 * 117.95790 * 42.66083 * 14 12 11 25 25 H 1.08004 * 117.96078 * 180.46706 * 15 14 12 26 26 H 1.09000 * 109.35594 * 103.07939 * 16 15 14 27 27 H 1.09005 * 109.35765 * 222.66194 * 16 15 14 28 28 H 1.08997 * 109.64313 * 169.11989 * 17 16 15 29 29 H 1.08997 * 109.64009 * 289.54238 * 17 16 15 30 30 H 1.09001 * 109.63908 * 289.32688 * 18 12 11 31 31 H 1.08998 * 109.64051 * 49.95963 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0009 12 6 6.0319 -3.9419 0.0014 13 1 5.3652 -4.6344 -0.5125 14 6 6.2280 -4.3986 1.4175 15 6 7.2904 -5.0025 1.8442 16 6 8.4784 -5.3219 0.9847 17 6 8.0982 -5.2318 -0.4948 18 6 7.3772 -3.8984 -0.7265 19 1 -0.4850 0.8400 -0.0004 20 1 3.8753 -0.6803 -0.8889 21 1 3.8746 -0.6799 0.8911 22 1 3.6579 -3.1505 0.8908 23 1 3.6587 -3.1502 -0.8892 24 1 5.4334 -4.2114 2.1245 25 1 7.3238 -5.2951 2.8833 26 1 9.2784 -4.6123 1.1960 27 1 8.8250 -6.3309 1.2079 28 1 8.9986 -5.2732 -1.1077 29 1 7.4396 -6.0604 -0.7549 30 1 7.2116 -3.7546 -1.7942 31 1 7.9806 -3.0805 -0.3327 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205630782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:56 Heat of formation + Delta-G solvation = -71.653158 kcal Electronic energy + Delta-G solvation = -12122.181908 eV Core-core repulsion = 9981.318215 eV Total energy + Delta-G solvation = -2140.863693 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12038 -37.64305 -35.26905 -32.66218 -31.98573 -30.26458 -26.67650 -23.75326 -23.32235 -22.44118 -19.19959 -18.95930 -17.69266 -16.86387 -16.37598 -16.29977 -15.46458 -14.78164 -14.49336 -14.26531 -13.75704 -13.60976 -13.37264 -13.17055 -12.75555 -12.40309 -12.21360 -11.86577 -11.76416 -11.48850 -11.46281 -11.34273 -10.82425 -10.37023 -9.97130 -8.35225 -6.41368 1.26391 1.34835 1.36411 1.50062 2.33348 2.90646 2.99729 3.74917 3.84324 4.08972 4.27249 4.29605 4.31023 4.45882 4.47260 4.61130 4.74900 4.83567 4.93074 5.02020 5.09388 5.14565 5.31175 5.38227 5.39694 5.53764 5.68828 5.95003 6.17296 6.38607 6.64489 7.23998 8.80961 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.072811 B = 0.006689 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.465671 B = 4185.064018 C = 4276.917068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.253 1.253 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.038 0.962 9 C -0.006 4.006 10 C 0.088 3.912 11 O -0.399 6.399 12 C 0.108 3.892 13 H 0.064 0.936 14 C -0.202 4.202 15 C -0.133 4.133 16 C -0.094 4.094 17 C -0.113 4.113 18 C -0.114 4.114 19 H 0.270 0.730 20 H 0.023 0.977 21 H 0.021 0.979 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.141 -9.506 0.511 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.177 1.177 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.056 0.944 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.320 6.320 12 C 0.050 3.950 13 H 0.082 0.918 14 C -0.220 4.220 15 C -0.151 4.151 16 C -0.131 4.131 17 C -0.150 4.150 18 C -0.152 4.152 19 H 0.079 0.921 20 H 0.042 0.958 21 H 0.039 0.961 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.135 0.865 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.092 -9.237 0.517 20.320 hybrid contribution -0.794 0.556 0.214 0.993 sum 17.298 -8.681 0.731 19.368 Atomic orbital electron populations 1.70037 1.08123 1.28487 1.51834 1.25918 0.95641 1.03380 0.93638 0.85645 0.79296 0.78187 0.79481 1.18778 1.17703 1.20291 1.21218 0.90975 0.93728 1.51694 0.94375 1.19415 0.94039 0.93663 0.97232 1.22318 0.79233 0.98292 0.98999 1.87911 1.20334 1.28606 1.95102 1.21100 0.95869 0.84290 0.93706 0.91790 1.22564 0.99790 1.01853 0.97822 1.22343 0.94512 0.97751 1.00533 1.20600 0.95711 1.03196 0.93574 1.21606 1.00970 0.95644 0.96770 1.21669 0.93860 0.99537 1.00124 0.92113 0.95845 0.96052 0.94371 0.93867 0.89322 0.86533 0.89745 0.88725 0.88887 0.91386 0.90929 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.95 45.59 27.47 68.60 1.88 47.47 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C -0.01 -0.31 4.41 29.85 0.13 -0.17 16 10 C 0.09 3.85 5.67 71.98 0.41 4.26 16 11 O -0.40 -15.89 9.96 -148.98 -1.48 -17.38 16 12 C 0.11 3.32 2.87 29.66 0.09 3.40 16 13 H 0.06 1.93 7.78 -2.39 -0.02 1.91 16 14 C -0.20 -5.77 9.37 27.04 0.25 -5.52 16 15 C -0.13 -2.92 9.80 27.04 0.27 -2.66 16 16 C -0.09 -1.53 6.11 29.66 0.18 -1.35 16 17 C -0.11 -1.92 6.01 30.72 0.18 -1.74 16 18 C -0.11 -2.76 5.64 30.72 0.17 -2.59 16 19 H 0.27 15.82 8.31 -92.71 -0.77 15.04 16 20 H 0.02 1.16 7.57 -2.39 -0.02 1.15 16 21 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.04 1.85 8.08 -2.39 -0.02 1.83 16 24 H 0.09 2.77 8.06 -2.91 -0.02 2.75 16 25 H 0.12 2.19 8.06 -2.91 -0.02 2.16 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.14 8.13 -2.39 -0.02 1.13 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 Total: -1.00 -67.11 257.16 4.11 -63.00 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 1.01 Total: 3.58 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 2.39 Total: -37.14 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.30 Total: -59.53 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.48 Total: -17.38 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -67.11 4.11 -63.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205630782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.650 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds