Wall clock time and date at job start Sun Mar 29 2020 21:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48497 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00101 * 3 2 1 6 6 H 1.48503 * 109.47179 * 59.99699 * 3 2 1 7 7 C 1.37879 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47077 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47573 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.42902 * 113.99812 * 179.97438 * 12 11 10 14 14 C 1.54637 * 111.03496 * 149.99968 * 13 12 11 15 15 C 1.51103 * 104.72289 * 93.39806 * 14 13 12 16 16 C 1.30521 * 111.10533 * 16.43786 * 15 14 13 17 17 C 1.51107 * 111.10409 * 359.97438 * 16 15 14 18 18 H 0.96991 * 120.00422 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47603 * 59.99930 * 9 7 2 20 20 H 1.09005 * 109.47348 * 299.99405 * 9 7 2 21 21 H 1.08997 * 109.47359 * 59.99480 * 10 9 7 22 22 H 1.09007 * 109.47173 * 299.99399 * 10 9 7 23 23 H 1.09006 * 109.46864 * 59.99499 * 11 10 9 24 24 H 1.08995 * 109.46922 * 300.00179 * 11 10 9 25 25 H 1.08998 * 110.94450 * 26.01615 * 13 12 11 26 26 H 1.08997 * 110.38971 * 212.21023 * 14 13 12 27 27 H 1.09004 * 110.38871 * 334.59143 * 14 13 12 28 28 H 1.08001 * 124.44506 * 196.41222 * 15 14 13 29 29 H 1.07998 * 124.44978 * 180.02562 * 16 15 14 30 30 H 1.08996 * 110.38038 * 224.74997 * 17 16 15 31 31 H 1.09001 * 110.48291 * 102.42232 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 8 2.4092 -6.0732 0.0006 13 6 1.7946 -7.3633 0.0017 14 6 2.6836 -8.4022 -0.7205 15 6 3.5052 -9.0349 0.3785 16 6 2.9896 -8.7883 1.5520 17 6 1.7385 -7.9496 1.4313 18 1 -0.4850 0.8399 0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8904 21 1 2.8721 -3.6043 0.8904 22 1 2.8720 -3.6043 -0.8896 23 1 0.8535 -5.0451 -0.8886 24 1 0.8542 -5.0446 0.8913 25 1 0.8007 -7.3218 -0.4438 26 1 2.0662 -9.1532 -1.2133 27 1 3.3329 -7.9090 -1.4440 28 1 4.4011 -9.6152 0.2146 29 1 3.4033 -9.1372 2.4866 30 1 1.7453 -7.1491 2.1710 31 1 0.8504 -8.5698 1.5521 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205662798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:39 Heat of formation + Delta-G solvation = -49.138759 kcal Electronic energy + Delta-G solvation = -11899.509268 eV Core-core repulsion = 9759.621872 eV Total energy + Delta-G solvation = -2139.887396 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.09978 -36.19210 -33.68821 -31.42986 -28.27134 -28.12653 -26.39509 -22.93706 -20.78720 -20.03396 -18.81235 -16.75935 -16.21127 -16.02107 -15.06786 -14.43681 -13.73201 -13.40283 -13.06061 -12.27696 -12.17988 -12.14346 -11.56183 -11.33204 -11.20067 -10.95056 -10.86702 -10.51843 -10.32749 -9.81202 -9.43595 -9.12349 -9.08289 -8.92190 -8.34440 -5.99577 -4.01583 2.28014 3.32578 3.39788 3.44858 3.98189 4.48262 4.64569 4.69248 5.14159 5.27222 5.36548 5.57859 5.64766 5.71342 5.76475 5.79788 5.93985 5.99665 6.02326 6.24242 6.50979 6.71929 6.77632 6.89255 7.12077 7.64574 7.70550 7.80626 8.00361 8.43658 9.05402 9.62502 11.12097 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.088167 B = 0.005541 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.503945 B = 5052.212573 C = 5132.827773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.061 3.939 12 O -0.377 6.377 13 C 0.080 3.920 14 C -0.101 4.101 15 C -0.167 4.167 16 C -0.161 4.161 17 C -0.125 4.125 18 H 0.260 0.740 19 H 0.017 0.983 20 H 0.017 0.983 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -15.876 0.620 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.015 4.015 12 O -0.296 6.296 13 C 0.021 3.979 14 C -0.138 4.138 15 C -0.185 4.185 16 C -0.179 4.179 17 C -0.162 4.162 18 H 0.069 0.931 19 H 0.035 0.965 20 H 0.035 0.965 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.097 0.903 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.979 -15.718 0.614 16.010 hybrid contribution 0.144 0.870 0.102 0.888 sum 3.124 -14.848 0.715 15.190 Atomic orbital electron populations 1.69974 1.06079 1.26521 1.51067 1.25029 0.94862 0.99314 0.95310 0.86512 0.80158 0.83650 0.77556 1.19679 1.21000 1.21006 1.21269 0.93183 0.90865 1.50335 0.92476 1.19056 0.93936 0.91121 0.97315 1.21647 0.99624 0.91771 1.01469 1.22842 0.92217 0.87072 0.99362 1.87955 1.34044 1.12920 1.94675 1.22852 0.95982 0.84511 0.94532 1.21512 0.97989 0.96552 0.97753 1.23188 0.99454 1.00793 0.95052 1.23177 0.97325 0.99441 0.97972 1.21918 0.96736 0.99034 0.98559 0.93051 0.96490 0.96487 0.92641 0.92622 0.93828 0.93886 0.91103 0.89927 0.90035 0.86025 0.86124 0.90300 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.37 5.52 -26.73 -0.15 -2.52 16 11 C 0.06 1.14 5.77 37.16 0.21 1.35 16 12 O -0.38 -6.68 10.11 -35.23 -0.36 -7.03 16 13 C 0.08 1.10 3.66 -25.02 -0.09 1.01 16 14 C -0.10 -1.20 6.57 -26.83 -0.18 -1.37 16 15 C -0.17 -1.91 10.77 -35.69 -0.38 -2.29 16 16 C -0.16 -1.89 10.78 -35.69 -0.38 -2.27 16 17 C -0.13 -1.56 6.56 -26.84 -0.18 -1.73 16 18 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 19 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 20 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -30.84 264.75 -7.36 -38.21 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -5.02 Total: -4.41 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.70 Total: -21.18 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.36 Total: -7.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.84 -7.36 -38.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205662798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.932 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds