Wall clock time and date at job start Sun Mar 29 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 N 1.30272 * 126.28028 * 89.97438 * 3 2 1 5 5 N 1.28674 * 109.38187 * 180.02562 * 4 3 2 6 6 C 1.30276 * 109.37873 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.28250 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46939 * 195.02200 * 7 6 5 9 9 N 1.46897 * 109.46815 * 315.01853 * 7 6 5 10 10 C 1.50692 * 109.47287 * 75.01916 * 7 6 5 11 11 H 1.08002 * 120.00361 * 0.02562 * 10 7 6 12 12 C 1.37883 * 119.99988 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99786 * 0.02562 * 12 10 7 14 14 Si 1.86801 * 120.00077 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.46930 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46906 * 119.99889 * 14 12 10 17 17 H 1.48494 * 109.46979 * 240.00117 * 14 12 10 18 18 O 1.34364 * 126.28208 * 269.97587 * 3 2 1 19 19 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47125 * 299.99572 * 1 2 3 21 21 H 1.08998 * 109.47323 * 60.00339 * 1 2 3 22 22 H 1.09006 * 109.47163 * 239.99875 * 2 1 3 23 23 H 1.09004 * 109.47043 * 120.00011 * 2 1 3 24 24 H 1.00900 * 111.00154 * 59.99909 * 9 7 6 25 25 H 1.00906 * 111.00198 * 183.95682 * 9 7 6 26 26 H 0.96994 * 119.99803 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2888 2.1478 1.0502 5 7 2.6988 3.3087 0.6761 6 6 2.7173 3.3619 -0.6254 7 6 3.1337 4.5429 -1.4638 8 1 2.7990 4.3956 -2.4906 9 7 2.5273 5.7662 -0.9219 10 6 4.6348 4.6726 -1.4384 11 1 5.2282 3.9699 -0.8721 12 6 5.2510 5.6879 -2.1389 13 7 4.5286 6.5433 -2.8289 14 14 7.1119 5.8483 -2.1080 15 1 7.6878 4.7695 -1.2656 16 1 7.6417 5.7323 -3.4904 17 1 7.4854 7.1702 -1.5440 18 8 2.2978 2.1703 -1.0831 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.8222 5.9250 0.0299 25 1 2.7387 6.5630 -1.5037 26 1 4.9620 7.2577 -3.3214 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217718566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:06 Heat of formation + Delta-G solvation = -4.858287 kcal Electronic energy + Delta-G solvation = -12294.013404 eV Core-core repulsion = 9987.079900 eV Total energy + Delta-G solvation = -2306.933505 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.08972 -37.18574 -37.00942 -35.16997 -33.49264 -30.64487 -28.35341 -25.93469 -25.33153 -22.69339 -22.63789 -19.02370 -18.25735 -17.94206 -17.00819 -16.33865 -16.03986 -15.10365 -14.91701 -14.66421 -13.75000 -13.59036 -13.34977 -13.07205 -12.89170 -12.83748 -12.72645 -12.44274 -12.10995 -12.03724 -11.71601 -10.86969 -10.39957 -9.46920 -8.32038 -6.56866 0.32248 1.34589 1.37828 1.43383 1.47545 1.54179 2.32016 2.91411 3.05544 3.65500 3.98053 4.19228 4.32512 4.37606 4.42019 4.57202 4.87926 4.95225 5.04823 5.20076 5.28899 5.47747 5.68891 6.34517 6.61039 6.90563 7.18990 7.43114 8.67766 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.061887 B = 0.009006 C = 0.008595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.325290 B = 3108.135750 C = 3256.891563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.020 4.020 3 C 0.144 3.856 4 N -0.324 5.324 5 N -0.323 5.323 6 C 0.206 3.794 7 C 0.304 3.696 8 H 0.050 0.950 9 N -0.834 5.834 10 C -0.571 4.571 11 H 0.044 0.956 12 C 0.035 3.965 13 N -0.905 5.905 14 Si 0.973 3.027 15 H -0.278 1.278 16 H -0.270 1.270 17 H -0.271 1.271 18 O -0.239 6.239 19 H 0.110 0.890 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.117 0.883 23 H 0.127 0.873 24 H 0.329 0.671 25 H 0.363 0.637 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 -10.005 1.465 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.059 4.059 3 C -0.068 4.068 4 N -0.169 5.169 5 N -0.168 5.168 6 C -0.006 4.006 7 C 0.191 3.809 8 H 0.068 0.932 9 N -0.367 5.367 10 C -0.611 4.611 11 H 0.063 0.937 12 C -0.167 4.167 13 N -0.543 5.543 14 Si 0.798 3.202 15 H -0.203 1.203 16 H -0.195 1.195 17 H -0.196 1.196 18 O -0.119 6.119 19 H 0.128 0.872 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.135 0.865 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.181 0.819 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.721 -9.842 2.458 11.189 hybrid contribution 1.799 0.414 -1.146 2.172 sum -2.922 -9.428 1.312 9.957 Atomic orbital electron populations 1.21793 0.91639 1.04814 1.02064 1.20490 0.97826 0.80201 1.07339 1.29130 0.99072 0.99518 0.79129 1.74168 1.16571 0.98937 1.27252 1.74216 1.19258 1.13143 1.10183 1.28870 0.93354 0.86781 0.91595 1.17314 0.92144 0.81013 0.90401 0.93223 1.59159 1.63897 1.06574 1.07079 1.21659 0.91330 1.15135 1.32996 0.93744 1.25673 1.03656 0.94313 0.93093 1.69785 1.37515 1.16326 1.30630 0.85278 0.78583 0.78162 0.78221 1.20288 1.19531 1.19625 1.84776 1.64153 1.23748 1.39207 0.87178 0.92911 0.93081 0.86471 0.85488 0.86086 0.81909 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.89 71.98 0.71 -1.91 15 2 C -0.02 -0.44 6.56 29.85 0.20 -0.24 15 3 C 0.14 5.27 7.73 88.34 0.68 5.96 15 4 N -0.32 -14.08 12.22 -165.50 -2.02 -16.10 15 5 N -0.32 -15.98 12.09 -165.50 -2.00 -17.98 15 6 C 0.21 10.20 7.24 88.34 0.64 10.84 15 7 C 0.30 15.86 3.25 43.42 0.14 16.00 15 8 H 0.05 2.73 8.14 -2.38 -0.02 2.71 15 9 N -0.83 -41.31 9.18 -174.97 -1.61 -42.92 15 10 C -0.57 -31.34 8.71 25.60 0.22 -31.12 15 11 H 0.04 2.54 7.74 -2.91 -0.02 2.51 15 12 C 0.04 1.84 5.38 84.66 0.46 2.30 15 13 N -0.90 -47.66 11.54 21.45 0.25 -47.41 15 14 Si 0.97 41.93 29.54 68.60 2.03 43.96 15 15 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 17 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 18 O -0.24 -10.45 10.87 -3.71 -0.04 -10.49 15 19 H 0.11 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.12 1.99 8.14 -2.38 -0.02 1.97 15 23 H 0.13 2.20 8.14 -2.38 -0.02 2.18 15 24 H 0.33 16.22 8.87 -89.69 -0.80 15.42 15 25 H 0.36 18.32 7.08 -89.69 -0.63 17.69 15 26 H 0.28 13.63 8.31 -92.71 -0.77 12.86 15 Total: -1.00 -62.50 236.39 -0.57 -63.07 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.22 Total: 26.05 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 3.05 Total: 1.83 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -5.38 Total: -124.41 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.04 Total: -10.49 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -62.50 -0.57 -63.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217718566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.209 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds