Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48504 * 109.47107 * 269.99811 * 3 2 1 5 5 H 1.48499 * 109.46974 * 29.99628 * 3 2 1 6 6 H 1.48493 * 109.47270 * 149.99831 * 3 2 1 7 7 C 1.38635 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00055 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99958 * 0.02562 * 7 2 1 10 10 C 1.42898 * 116.99716 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.79938 * 29.99743 * 10 9 7 12 12 C 1.54931 * 109.85212 * 269.14715 * 10 9 7 13 13 C 1.52717 * 108.57385 * 183.41815 * 12 10 9 14 14 C 1.50802 * 108.94781 * 302.17926 * 13 12 10 15 15 C 1.31668 * 118.08785 * 104.86373 * 14 13 12 16 16 C 1.50523 * 116.92109 * 0.26750 * 15 14 13 17 17 C 1.49511 * 113.04211 * 275.43393 * 16 15 14 18 18 C 1.51383 * 117.51747 * 79.71962 * 17 16 15 19 19 H 0.96998 * 120.00323 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.61704 * 303.13965 * 12 10 9 21 21 H 1.09001 * 109.62294 * 63.68698 * 12 10 9 22 22 H 1.09000 * 109.55582 * 182.34012 * 13 12 10 23 23 H 1.09002 * 109.64624 * 62.07348 * 13 12 10 24 24 H 1.08002 * 120.96120 * 284.83200 * 14 13 12 25 25 H 1.08001 * 121.53850 * 180.25100 * 15 14 13 26 26 H 1.09001 * 108.76321 * 154.51562 * 16 15 14 27 27 H 1.09000 * 108.76955 * 36.35542 * 16 15 14 28 28 H 1.09002 * 107.83466 * 317.68162 * 17 16 15 29 29 H 1.09000 * 107.80296 * 201.72441 * 17 16 15 30 30 H 1.09003 * 109.26660 * 165.92063 * 18 17 16 31 31 H 1.08993 * 109.24050 * 46.44113 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0001 9 8 1.3344 -2.3691 0.0005 10 6 2.1128 -3.5675 0.0005 11 1 3.0588 -3.3933 0.5133 12 6 2.3812 -4.0206 -1.4565 13 6 3.1395 -5.3457 -1.4221 14 6 4.4183 -5.1579 -0.6451 15 6 4.4797 -5.6479 0.5755 16 6 3.2570 -6.3627 1.0852 17 6 2.2384 -5.4368 1.6686 18 6 1.3368 -4.6931 0.7064 19 1 -0.4850 0.8400 0.0004 20 1 1.4337 -4.1546 -1.9785 21 1 2.9812 -3.2686 -1.9690 22 1 3.3734 -5.6588 -2.4396 23 1 2.5267 -6.1061 -0.9380 24 1 5.2598 -4.6371 -1.0775 25 1 5.3664 -5.5419 1.1828 26 1 3.5617 -7.0762 1.8508 27 1 2.8015 -6.9104 0.2602 28 1 2.7657 -4.6974 2.2714 29 1 1.6046 -6.0179 2.3384 30 1 0.5003 -4.2626 1.2570 31 1 0.9555 -5.3898 -0.0400 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224382888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = -48.612103 kcal Electronic energy + Delta-G solvation = -12788.670768 eV Core-core repulsion = 10648.806210 eV Total energy + Delta-G solvation = -2139.864558 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16221 -37.63836 -34.16281 -33.80537 -32.67411 -27.76189 -26.74749 -25.71503 -22.62910 -21.47140 -19.66255 -18.84512 -17.62610 -16.82358 -16.01900 -15.65898 -15.43369 -14.83032 -14.38438 -14.23190 -13.87689 -13.38952 -13.02881 -12.88963 -12.45596 -12.28932 -12.19813 -12.04306 -11.80672 -11.60134 -11.15038 -11.05086 -10.78418 -10.10188 -9.68916 -8.15763 -5.83287 1.37147 1.38859 1.43799 1.52793 2.33417 3.16503 3.63572 3.92016 3.95188 4.13758 4.18421 4.30198 4.47743 4.59084 4.65922 4.73090 4.81714 4.90209 4.96200 5.10219 5.17223 5.18459 5.27721 5.31819 5.34959 5.53269 5.56937 5.84860 6.06112 6.24113 7.27701 8.13655 9.09517 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.049580 B = 0.009743 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.612413 B = 2873.183964 C = 3003.646517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.046 4.046 3 Si 1.000 3.000 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.366 4.366 8 H 0.065 0.935 9 O -0.333 6.333 10 C 0.088 3.912 11 H 0.038 0.962 12 C -0.126 4.126 13 C -0.096 4.096 14 C -0.167 4.167 15 C -0.166 4.166 16 C -0.092 4.092 17 C -0.105 4.105 18 C -0.110 4.110 19 H 0.259 0.741 20 H 0.054 0.946 21 H 0.039 0.961 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.270 -11.726 0.554 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.238 4.238 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.445 4.445 8 H 0.083 0.917 9 O -0.249 6.249 10 C 0.030 3.970 11 H 0.056 0.944 12 C -0.164 4.164 13 C -0.132 4.132 14 C -0.185 4.185 15 C -0.184 4.184 16 C -0.128 4.128 17 C -0.143 4.143 18 C -0.148 4.148 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.127 0.873 25 H 0.142 0.858 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.944 -11.653 0.574 14.115 hybrid contribution 0.373 1.147 -0.113 1.212 sum 8.317 -10.506 0.461 13.407 Atomic orbital electron populations 1.70188 1.07459 1.26996 1.53995 1.26168 0.96741 1.01860 0.99030 0.84834 0.77668 0.76645 0.78608 1.19621 1.20270 1.18488 1.21279 0.90380 0.83816 1.49009 0.91733 1.85593 1.34388 1.11987 1.92919 1.22773 0.93404 0.85978 0.94871 0.94437 1.22251 0.99407 0.97276 0.97516 1.20951 0.94785 0.96652 1.00856 1.23165 0.98114 1.00065 0.97138 1.23219 0.99138 0.99996 0.96016 1.20076 0.93314 0.97646 1.01786 1.20413 0.97202 0.98550 0.98107 1.21539 0.98283 0.95962 0.99001 0.93208 0.92730 0.94182 0.90413 0.88802 0.87281 0.85845 0.89551 0.89971 0.94051 0.90406 0.93471 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.62 13.67 21.61 0.30 -61.33 16 2 C -0.05 -2.77 5.49 84.83 0.47 -2.31 16 3 Si 1.00 46.56 29.55 68.60 2.03 48.59 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.37 -22.42 9.80 67.91 0.67 -21.75 16 8 H 0.07 3.75 7.65 -2.91 -0.02 3.72 16 9 O -0.33 -20.08 9.36 -81.99 -0.77 -20.85 16 10 C 0.09 3.99 2.34 31.54 0.07 4.06 16 11 H 0.04 1.73 5.96 -2.39 -0.01 1.72 16 12 C -0.13 -4.95 5.27 31.16 0.16 -4.79 16 13 C -0.10 -2.75 5.41 29.79 0.16 -2.59 16 14 C -0.17 -4.63 8.55 25.06 0.21 -4.41 16 15 C -0.17 -4.18 9.28 24.97 0.23 -3.95 16 16 C -0.09 -2.12 5.13 28.68 0.15 -1.97 16 17 C -0.11 -3.04 4.90 28.95 0.14 -2.89 16 18 C -0.11 -4.11 5.22 30.35 0.16 -3.95 16 19 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 20 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 21 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.09 2.44 3.57 -2.39 -0.01 2.43 16 24 H 0.11 2.90 8.06 -2.91 -0.02 2.88 16 25 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.77 5.62 -2.39 -0.01 1.76 16 28 H 0.04 1.32 7.71 -2.39 -0.02 1.31 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.99 7.95 -2.39 -0.02 1.98 16 31 H 0.08 2.52 6.57 -2.39 -0.02 2.51 16 Total: -1.00 -71.80 245.49 5.07 -66.73 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.09 Total: 11.41 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 2.42 Total: -44.56 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.30 Total: -61.33 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.77 Total: -20.85 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -71.80 5.07 -66.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.114 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds