Wall clock time and date at job start Sun Mar 29 2020 21:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34330 * 126.15985 * 2 1 4 4 O 1.34754 * 107.10985 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75570 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.61619 * 180.02562 * 5 4 3 7 7 N 1.46509 * 109.46739 * 269.97193 * 6 5 4 8 8 C 1.46496 * 120.00141 * 270.00285 * 7 6 5 9 9 C 1.36939 * 119.99482 * 90.00277 * 7 6 5 10 10 H 1.07998 * 120.00136 * 22.34702 * 9 7 6 11 11 C 1.38810 * 119.99506 * 202.34678 * 9 7 6 12 12 N 1.31624 * 120.00107 * 11.33652 * 11 9 7 13 13 Si 1.86803 * 119.99984 * 191.34154 * 11 9 7 14 14 H 1.48501 * 109.46991 * 59.99517 * 13 11 9 15 15 H 1.48496 * 109.47439 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46976 * 300.00187 * 13 11 9 17 17 N 1.30249 * 108.76258 * 0.02562 * 5 4 3 18 18 H 1.08999 * 109.46929 * 269.99828 * 1 2 3 19 19 H 1.08992 * 109.47524 * 29.99829 * 1 2 3 20 20 H 1.08998 * 109.46690 * 150.00654 * 1 2 3 21 21 H 1.07997 * 126.44651 * 0.02562 * 3 2 1 22 22 H 1.08992 * 109.47489 * 29.97515 * 6 5 4 23 23 H 1.08994 * 109.46904 * 149.97944 * 6 5 4 24 24 H 1.09005 * 109.47096 * 94.21299 * 8 7 6 25 25 H 1.08989 * 109.47244 * 214.21738 * 8 7 6 26 26 H 1.09003 * 109.47348 * 334.22171 * 8 7 6 27 27 H 0.97003 * 119.99785 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2996 1.0845 0.0000 4 8 3.5734 0.6447 -0.0006 5 6 3.5431 -0.6946 -0.0003 6 6 4.7481 -1.5997 -0.0003 7 7 5.1380 -1.8937 -1.3816 8 6 4.5710 -3.0551 -2.0714 9 6 6.0325 -1.0829 -2.0278 10 1 6.7137 -0.4683 -1.4580 11 6 6.0636 -1.0509 -3.4152 12 7 5.0996 -1.6188 -4.1083 13 14 7.4738 -0.2019 -4.2985 14 1 8.7552 -0.8534 -3.9257 15 1 7.2739 -0.3076 -5.7661 16 1 7.5137 1.2296 -3.9056 17 7 2.3007 -1.0856 -0.0002 18 1 -0.3633 0.0000 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5137 21 1 1.9768 2.1151 0.0004 22 1 5.5733 -1.1061 0.5130 23 1 4.5042 -2.5292 0.5140 24 1 3.6977 -2.7459 -2.6458 25 1 5.3170 -3.4782 -2.7439 26 1 4.2761 -3.8053 -1.3376 27 1 5.1212 -1.5962 -5.0779 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237644197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:57 Heat of formation + Delta-G solvation = 41.590403 kcal Electronic energy + Delta-G solvation = -12368.263316 eV Core-core repulsion = 10128.769889 eV Total energy + Delta-G solvation = -2239.493427 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.42567 -35.70695 -34.34776 -31.96666 -30.53126 -27.71276 -25.98544 -25.60709 -21.93649 -20.73266 -19.99934 -16.86012 -16.34072 -15.82943 -14.88245 -14.19428 -13.80153 -13.54282 -13.15092 -12.90060 -12.51692 -11.77020 -11.75932 -11.20668 -10.92938 -10.76224 -10.44993 -10.19995 -10.10566 -9.96228 -9.74433 -8.65588 -8.03296 -6.98141 -5.83681 -3.32324 2.24271 3.33266 3.38583 3.40297 3.44956 3.65304 4.43180 4.78926 5.35203 5.36383 5.52199 5.54699 5.82291 5.88994 6.02200 6.25458 6.35804 6.61612 6.72788 6.76907 7.10623 7.33997 7.69611 7.76458 8.25724 8.60827 9.10102 9.69443 10.17576 11.19973 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.045768 B = 0.010654 C = 0.010187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.637979 B = 2627.509463 C = 2747.899451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.023 4.023 3 C -0.110 4.110 4 O -0.200 6.200 5 C 0.206 3.794 6 C 0.227 3.773 7 N -0.576 5.576 8 C 0.161 3.839 9 C -0.269 4.269 10 H 0.075 0.925 11 C 0.008 3.992 12 N -0.900 5.900 13 Si 0.912 3.088 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.281 1.281 17 N -0.505 5.505 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.199 0.801 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.005 0.995 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 2.649 7.016 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C -0.182 4.182 4 O -0.086 6.086 5 C -0.004 4.004 6 C 0.096 3.904 7 N -0.296 5.296 8 C 0.017 3.983 9 C -0.398 4.398 10 H 0.093 0.907 11 C -0.192 4.192 12 N -0.543 5.543 13 Si 0.741 3.259 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.207 1.207 17 N -0.236 5.236 18 H 0.085 0.915 19 H 0.085 0.915 20 H 0.089 0.911 21 H 0.216 0.784 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.529 1.981 6.776 8.387 hybrid contribution 0.543 1.486 -0.819 1.781 sum -3.986 3.466 5.957 7.962 Atomic orbital electron populations 1.19988 0.87661 1.02699 1.01885 1.21689 0.97559 0.89066 1.05909 1.24470 0.81577 1.00254 1.11863 1.84512 1.29655 1.25143 1.69271 1.29315 0.97125 0.78996 0.95004 1.19878 0.87650 0.93131 0.89730 1.44335 1.47480 1.27611 1.10214 1.20907 0.98262 0.85778 0.93340 1.19296 1.09557 1.21731 0.89224 0.90684 1.25169 0.97824 0.99263 0.96906 1.70097 1.31217 1.46881 1.06070 0.86226 0.81707 0.79479 0.78479 1.20640 1.21479 1.20720 1.70317 1.01041 1.30973 1.21227 0.91506 0.91480 0.91064 0.78434 0.90695 0.89629 0.95020 0.93042 0.97604 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.43 36.01 0.38 -0.54 15 2 C -0.02 -0.43 7.11 -82.81 -0.59 -1.02 15 3 C -0.11 -2.04 12.08 29.35 0.35 -1.69 15 4 O -0.20 -4.42 10.78 5.35 0.06 -4.36 15 5 C 0.21 4.67 7.93 -12.95 -0.10 4.57 15 6 C 0.23 4.89 6.33 -5.19 -0.03 4.85 15 7 N -0.58 -14.81 2.91 -182.50 -0.53 -15.35 15 8 C 0.16 4.10 9.01 59.84 0.54 4.63 15 9 C -0.27 -7.42 9.67 -15.06 -0.15 -7.56 15 10 H 0.08 1.99 7.84 -52.49 -0.41 1.58 15 11 C 0.01 0.23 5.13 -17.43 -0.09 0.14 15 12 N -0.90 -26.54 10.58 55.49 0.59 -25.95 15 13 Si 0.91 21.81 29.57 -169.99 -5.03 16.78 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 15 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 N -0.50 -11.30 11.29 -7.35 -0.08 -11.39 15 18 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 19 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.20 2.71 8.06 -52.49 -0.42 2.29 15 22 H 0.07 1.46 8.03 -51.93 -0.42 1.04 15 23 H 0.09 1.63 7.86 -51.93 -0.41 1.22 15 24 H 0.03 0.89 7.42 -51.93 -0.39 0.51 15 25 H 0.05 1.36 7.19 -51.94 -0.37 0.99 15 26 H 0.01 0.12 7.84 -51.93 -0.41 -0.29 15 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 LS Contribution 241.12 15.07 3.63 3.63 Total: -1.00 -32.25 241.12 -4.28 -36.53 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.23 Total: -3.28 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.31 Total: 3.38 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.03 Total: -52.68 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: 0.06 Total: -4.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.25 -4.28 -36.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237644197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.122 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds