Wall clock time and date at job start Sun Mar 29 2020 21:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48498 * 109.47461 * 89.99805 * 3 2 1 5 5 H 1.48498 * 109.47196 * 210.00102 * 3 2 1 6 6 H 1.48502 * 109.46984 * 329.99373 * 3 2 1 7 7 C 1.38815 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99751 * 179.97438 * 9 7 2 11 11 C 1.53137 * 109.42631 * 120.79588 * 10 9 7 12 12 C 1.53712 * 108.88592 * 66.06420 * 11 10 9 13 13 H 1.09003 * 112.12886 * 187.72606 * 12 11 10 14 14 C 1.54607 * 107.80849 * 311.73492 * 12 11 10 15 15 C 1.55893 * 104.07525 * 88.77677 * 14 12 11 16 16 C 1.54612 * 104.99315 * 359.97438 * 15 14 12 17 17 H 1.09001 * 112.21789 * 146.87948 * 16 15 14 18 18 C 1.53138 * 109.43173 * 241.05838 * 10 9 7 19 19 N 1.48713 * 104.22363 * 25.19439 * 16 15 14 20 20 H 0.97000 * 120.00389 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00176 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.42988 * 0.90304 * 10 9 7 23 23 H 1.09005 * 109.57250 * 185.88209 * 11 10 9 24 24 H 1.09004 * 109.57206 * 306.24338 * 11 10 9 25 25 H 1.09001 * 110.36556 * 207.40401 * 14 12 11 26 26 H 1.09003 * 110.36643 * 329.72411 * 14 12 11 27 27 H 1.08992 * 110.28562 * 241.08926 * 15 14 12 28 28 H 1.09003 * 110.30034 * 118.86780 * 15 14 12 29 29 H 1.08994 * 109.56562 * 53.76205 * 18 10 9 30 30 H 1.09001 * 109.56742 * 174.11976 * 18 10 9 31 31 H 1.00901 * 111.00200 * 77.51213 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5476 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.6723 -4.4675 1.2411 12 6 0.1929 -4.8703 1.1321 13 1 -0.1750 -5.3336 2.0476 14 6 -0.6140 -3.6077 0.7509 15 6 -0.5901 -3.5989 -0.8078 16 6 0.2258 -4.8515 -1.2025 17 1 -0.1259 -5.2960 -2.1335 18 6 1.7075 -4.4474 -1.2633 19 7 0.0669 -5.7709 -0.0445 20 1 -0.4851 0.8400 -0.0004 21 1 0.3555 -2.3881 -0.0002 22 1 3.1294 -3.4568 0.0167 23 1 2.2911 -5.3631 1.2989 24 1 1.8207 -3.8609 2.1345 25 1 -1.6375 -3.6866 1.1175 26 1 -0.1341 -2.7152 1.1525 27 1 -0.1002 -2.6965 -1.1731 28 1 -1.6041 -3.6671 -1.2019 29 1 1.8808 -3.8264 -2.1421 30 1 2.3279 -5.3419 -1.3180 31 1 -0.8364 -6.2202 -0.0608 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246148926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:35 Heat of formation + Delta-G solvation = 82.826975 kcal Electronic energy + Delta-G solvation = -13481.326818 eV Core-core repulsion = 11379.454637 eV Total energy + Delta-G solvation = -2101.872181 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.45213 -34.18792 -31.69976 -30.60668 -30.23934 -28.14040 -23.78422 -23.41596 -21.19747 -19.63089 -18.77104 -17.54937 -16.32127 -14.56701 -14.10114 -13.60282 -13.08019 -13.05598 -12.47422 -12.25551 -11.97535 -11.88967 -11.22562 -10.92334 -10.85086 -10.50346 -10.39035 -10.11217 -10.00181 -9.61989 -9.46050 -8.89787 -8.73706 -8.21878 -6.81553 -5.76562 -3.00993 3.44331 3.50127 3.51297 4.62370 4.70366 5.32908 5.35482 5.57741 5.59073 5.83496 5.87107 5.92728 5.97297 6.07936 6.09496 6.28152 6.41241 6.65650 6.73762 6.76706 6.79528 6.97020 7.02487 7.04807 7.06891 7.43083 7.74340 7.81520 8.46561 9.57001 10.15729 10.50795 11.46885 Molecular weight = 196.13amu Principal moments of inertia in cm(-1) A = 0.057749 B = 0.012216 C = 0.011689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.738367 B = 2291.478039 C = 2394.899263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.018 4.018 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.066 0.934 9 N -0.745 5.745 10 C 0.167 3.833 11 C -0.120 4.120 12 C 0.067 3.933 13 H 0.077 0.923 14 C -0.178 4.178 15 C -0.181 4.181 16 C 0.069 3.931 17 H 0.078 0.922 18 C -0.119 4.119 19 N -0.660 5.660 20 H 0.255 0.745 21 H 0.417 0.583 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -8.772 -0.079 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.213 4.213 3 Si 0.737 3.263 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.407 5.407 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.043 4.043 13 H 0.095 0.905 14 C -0.217 4.217 15 C -0.220 4.220 16 C -0.041 4.041 17 H 0.096 0.904 18 C -0.159 4.159 19 N -0.286 5.286 20 H 0.065 0.935 21 H 0.275 0.725 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.517 -8.932 -0.079 8.948 hybrid contribution -0.800 1.450 0.004 1.656 sum -0.283 -7.483 -0.076 7.488 Atomic orbital electron populations 1.69628 1.04994 1.25681 1.58592 1.24680 0.95515 0.97542 1.03552 0.86196 0.78644 0.83997 0.77436 1.21888 1.20888 1.21908 1.19529 0.91237 0.85089 1.41606 0.91597 1.45419 1.08426 0.99661 1.87189 1.20275 0.95932 0.86829 0.91270 1.22188 0.94543 0.99093 1.00131 1.22809 0.96839 0.91412 0.93216 0.90512 1.23956 0.99448 1.02280 0.96026 1.24007 0.99502 1.02724 0.95797 1.22803 0.96791 0.91157 0.93393 0.90416 1.22182 0.94442 0.99108 1.00213 1.63866 1.35061 1.27020 1.02650 0.93531 0.72496 0.92446 0.92529 0.91951 0.93676 0.85033 0.84881 0.93766 0.91941 0.92555 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 8 H 0.07 1.78 7.65 -52.49 -0.40 1.38 16 9 N -0.75 -18.36 2.80 -53.29 -0.15 -18.50 16 10 C 0.17 3.47 3.22 -67.79 -0.22 3.26 16 11 C -0.12 -2.22 5.48 -26.29 -0.14 -2.37 16 12 C 0.07 1.18 4.49 -65.49 -0.29 0.88 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.18 -3.53 5.82 -24.34 -0.14 -3.67 16 15 C -0.18 -3.60 5.78 -24.34 -0.14 -3.74 16 16 C 0.07 1.20 4.54 -65.50 -0.30 0.90 16 17 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.12 -2.22 5.49 -26.30 -0.14 -2.37 16 19 N -0.66 -10.73 7.11 -94.68 -0.67 -11.40 16 20 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.42 10.22 1.10 -65.80 -0.07 10.15 16 22 H 0.06 1.21 7.77 -51.93 -0.40 0.81 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.13 3.15 5.33 -51.93 -0.28 2.87 16 27 H 0.13 3.19 5.27 -51.93 -0.27 2.92 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.32 4.62 8.93 -39.29 -0.35 4.27 16 LS Contribution 233.58 15.07 3.52 3.52 Total: -1.00 -28.74 233.58 -7.52 -36.26 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -4.30 Total: 14.29 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.63 Total: -14.55 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.10 Total: -56.86 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.74 -7.52 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246148926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.085 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds