Wall clock time and date at job start Sun Mar 29 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48498 * 109.47461 * 89.99805 * 3 2 1 5 5 H 1.48498 * 109.47196 * 210.00102 * 3 2 1 6 6 H 1.48502 * 109.46984 * 329.99373 * 3 2 1 7 7 C 1.38815 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99751 * 179.97438 * 9 7 2 11 11 C 1.53137 * 109.42631 * 120.79588 * 10 9 7 12 12 C 1.53712 * 108.88592 * 66.06420 * 11 10 9 13 13 H 1.09003 * 112.12886 * 187.72606 * 12 11 10 14 14 C 1.54607 * 107.80849 * 311.73492 * 12 11 10 15 15 C 1.55893 * 104.07525 * 88.77677 * 14 12 11 16 16 C 1.54612 * 104.99315 * 359.97438 * 15 14 12 17 17 H 1.09001 * 112.21789 * 146.87948 * 16 15 14 18 18 C 1.53138 * 109.43173 * 241.05838 * 10 9 7 19 19 N 1.48713 * 104.22363 * 25.19439 * 16 15 14 20 20 H 0.97000 * 120.00389 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00176 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.42988 * 0.90304 * 10 9 7 23 23 H 1.09005 * 109.57250 * 185.88209 * 11 10 9 24 24 H 1.09004 * 109.57206 * 306.24338 * 11 10 9 25 25 H 1.09001 * 110.36556 * 207.40401 * 14 12 11 26 26 H 1.09003 * 110.36643 * 329.72411 * 14 12 11 27 27 H 1.08992 * 110.28562 * 241.08926 * 15 14 12 28 28 H 1.09003 * 110.30034 * 118.86780 * 15 14 12 29 29 H 1.08994 * 109.56562 * 53.76205 * 18 10 9 30 30 H 1.09001 * 109.56742 * 174.11976 * 18 10 9 31 31 H 1.00901 * 111.00200 * 77.51213 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5476 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.6723 -4.4675 1.2411 12 6 0.1929 -4.8703 1.1321 13 1 -0.1750 -5.3336 2.0476 14 6 -0.6140 -3.6077 0.7509 15 6 -0.5901 -3.5989 -0.8078 16 6 0.2258 -4.8515 -1.2025 17 1 -0.1259 -5.2960 -2.1335 18 6 1.7075 -4.4474 -1.2633 19 7 0.0669 -5.7709 -0.0445 20 1 -0.4851 0.8400 -0.0004 21 1 0.3555 -2.3881 -0.0002 22 1 3.1294 -3.4568 0.0167 23 1 2.2911 -5.3631 1.2989 24 1 1.8207 -3.8609 2.1345 25 1 -1.6375 -3.6866 1.1175 26 1 -0.1341 -2.7152 1.1525 27 1 -0.1002 -2.6965 -1.1731 28 1 -1.6041 -3.6671 -1.2019 29 1 1.8808 -3.8264 -2.1421 30 1 2.3279 -5.3419 -1.3180 31 1 -0.8364 -6.2202 -0.0608 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246148926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:34 Heat of formation + Delta-G solvation = 63.520997 kcal Electronic energy + Delta-G solvation = -13482.163988 eV Core-core repulsion = 11379.454637 eV Total energy + Delta-G solvation = -2102.709351 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99201 -36.00169 -33.53664 -32.06590 -31.92327 -29.87143 -25.76584 -24.93001 -22.82991 -21.13103 -20.44556 -19.30812 -17.86880 -16.58738 -15.93578 -15.22544 -14.73772 -14.48629 -13.99414 -13.92684 -13.74241 -13.34177 -12.97602 -12.86333 -12.67767 -12.18200 -12.09829 -12.01735 -11.51800 -11.28520 -11.13288 -10.74307 -10.56897 -9.60334 -8.79436 -7.91138 -5.13173 1.46931 1.47485 1.55868 2.59128 3.31844 3.42385 3.86666 3.87257 4.12800 4.21993 4.35910 4.46049 4.48357 4.49518 4.50713 4.85819 4.90752 5.16357 5.17454 5.22623 5.29628 5.35464 5.42815 5.45406 5.49036 5.57604 5.93331 6.34999 6.58887 7.42534 8.22305 8.50523 9.32455 Molecular weight = 196.13amu Principal moments of inertia in cm(-1) A = 0.057749 B = 0.012216 C = 0.011689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.738367 B = 2291.478039 C = 2394.899263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.290 1.290 5 H -0.274 1.274 6 H -0.297 1.297 7 C -0.245 4.245 8 H 0.065 0.935 9 N -0.756 5.756 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.075 3.925 13 H 0.103 0.897 14 C -0.177 4.177 15 C -0.179 4.179 16 C 0.076 3.924 17 H 0.104 0.896 18 C -0.115 4.115 19 N -0.646 5.646 20 H 0.249 0.751 21 H 0.418 0.582 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -10.546 -0.109 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.218 1.218 5 H -0.199 1.199 6 H -0.224 1.224 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.418 5.418 10 C 0.046 3.954 11 C -0.154 4.154 12 C -0.035 4.035 13 H 0.121 0.879 14 C -0.216 4.216 15 C -0.219 4.219 16 C -0.034 4.034 17 H 0.122 0.878 18 C -0.154 4.154 19 N -0.273 5.273 20 H 0.058 0.942 21 H 0.276 0.724 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.661 -10.752 -0.109 10.772 hybrid contribution -0.818 1.947 0.014 2.112 sum -0.158 -8.805 -0.095 8.807 Atomic orbital electron populations 1.69780 1.06193 1.25744 1.60345 1.25389 0.96356 1.00483 1.04630 0.85230 0.77690 0.80218 0.77206 1.21790 1.19916 1.22367 1.19883 0.91445 0.86562 1.39902 0.91721 1.45680 1.08796 1.00136 1.87178 1.20532 0.95076 0.86174 0.93597 1.22088 0.95988 0.99237 0.98133 1.22780 0.95407 0.90574 0.94768 0.87894 1.23804 1.00134 1.01748 0.95957 1.23862 1.00127 1.02111 0.95831 1.22779 0.95329 0.90324 0.94970 0.87796 1.22080 0.95915 0.99268 0.98171 1.63791 1.36363 1.25776 1.01374 0.94218 0.72396 0.93556 0.90323 0.93362 0.92494 0.89275 0.89151 0.92644 0.93380 0.90348 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 7 C -0.25 -13.79 9.93 84.03 0.83 -12.96 16 8 H 0.06 3.54 7.65 -2.91 -0.02 3.52 16 9 N -0.76 -37.84 2.80 -322.51 -0.90 -38.74 16 10 C 0.15 6.35 3.22 45.08 0.15 6.50 16 11 C -0.11 -4.06 5.48 30.88 0.17 -3.89 16 12 C 0.07 2.41 4.49 45.35 0.20 2.61 16 13 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.18 -6.86 5.82 32.14 0.19 -6.67 16 15 C -0.18 -6.98 5.78 32.14 0.19 -6.80 16 16 C 0.08 2.45 4.54 45.35 0.21 2.66 16 17 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 18 C -0.11 -4.06 5.49 30.88 0.17 -3.89 16 19 N -0.65 -18.43 7.11 -453.46 -3.22 -21.66 16 20 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 21 H 0.42 20.90 1.10 -116.17 -0.13 20.77 16 22 H 0.05 1.95 7.77 -2.39 -0.02 1.93 16 23 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 24 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.09 4.34 5.33 -2.39 -0.01 4.33 16 27 H 0.09 4.41 5.27 -2.39 -0.01 4.40 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.34 8.16 8.93 -89.69 -0.80 7.36 16 Total: -1.00 -61.87 233.58 0.95 -60.92 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.20 Total: 35.43 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 2.57 Total: -26.39 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -3.84 Total: -118.77 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -61.87 0.95 -60.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246148926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.438 kcal (2) G-P(sol) polarization free energy of solvation -61.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds