Wall clock time and date at job start Sun Mar 29 2020 21:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 11 11 C 1.38028 * 120.32834 * 89.99894 * 10 9 7 12 12 N 1.31973 * 120.90011 * 179.97438 * 11 10 9 13 13 C 1.32370 * 121.64358 * 0.02562 * 12 11 10 14 14 N 1.39153 * 119.71229 * 180.02562 * 13 12 11 15 15 C 1.39297 * 120.56888 * 0.02562 * 13 12 11 16 16 F 1.35100 * 120.47233 * 179.97438 * 15 13 12 17 17 C 1.38481 * 119.05407 * 359.66417 * 15 13 12 18 18 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 19 19 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 20 20 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 21 21 H 1.08003 * 119.54937 * 359.97438 * 11 10 9 22 22 H 0.97002 * 120.00495 * 359.97438 * 14 13 12 23 23 H 0.97004 * 119.99742 * 180.02562 * 14 13 12 24 24 H 1.08004 * 120.75982 * 180.31237 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2305 -3.6445 0.0182 11 6 2.6835 -4.1681 1.2123 12 7 3.5407 -5.1713 1.2306 13 6 3.9993 -5.7135 0.1135 14 7 4.9019 -6.7705 0.1797 15 6 3.5860 -5.2350 -1.1278 16 9 4.0557 -5.7894 -2.2667 17 6 2.6820 -4.1871 -1.1776 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6248 -2.5524 0.9029 20 1 0.6241 -2.5613 -0.8770 21 1 2.3316 -3.7510 2.1443 22 1 5.1927 -7.1067 1.0418 23 1 5.2408 -7.1706 -0.6364 24 1 2.3392 -3.7979 -2.1249 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058244.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:17 Heat of formation + Delta-G solvation = -26.076054 kcal Electronic energy + Delta-G solvation = -11685.705305 eV Core-core repulsion = 9319.817334 eV Total energy + Delta-G solvation = -2365.887970 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.52803 -39.60260 -35.08551 -33.32851 -31.67595 -29.84167 -26.27640 -23.28875 -23.28549 -21.11633 -17.70079 -17.21547 -16.94709 -16.23761 -15.45515 -15.15370 -14.21116 -13.78606 -13.53814 -13.11289 -12.56313 -12.51826 -11.87643 -11.34698 -10.66619 -10.52453 -10.39720 -10.12382 -9.23893 -9.11804 -8.71913 -8.41689 -7.28762 -6.42011 -4.15227 1.51182 1.85506 3.41850 3.44891 3.60949 3.67477 4.22795 4.51829 4.53937 4.98059 5.31095 5.36694 5.59622 5.90508 6.12061 6.44964 6.63973 6.96873 7.14332 7.34963 7.47831 7.64364 8.04762 8.37359 8.47843 8.78453 9.55777 10.96057 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.055791 B = 0.008694 C = 0.008499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.750347 B = 3219.909930 C = 3293.747626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.596 4.596 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.105 4.105 11 C 0.129 3.871 12 N -0.521 5.521 13 C 0.354 3.646 14 N -0.858 5.858 15 C -0.026 4.026 16 F -0.146 7.146 17 C -0.073 4.073 18 H 0.270 0.730 19 H 0.025 0.975 20 H 0.022 0.978 21 H 0.160 0.840 22 H 0.402 0.598 23 H 0.405 0.595 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 -9.798 -0.596 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.900 3.100 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.634 4.634 8 H 0.069 0.931 9 C 0.008 3.992 10 C -0.109 4.109 11 C -0.027 4.027 12 N -0.238 5.238 13 C 0.116 3.884 14 N -0.405 5.405 15 C -0.052 4.052 16 F -0.125 7.125 17 C -0.099 4.099 18 H 0.080 0.920 19 H 0.043 0.957 20 H 0.040 0.960 21 H 0.178 0.822 22 H 0.231 0.769 23 H 0.235 0.765 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.670 -8.459 0.151 10.774 hybrid contribution 0.323 -1.714 -1.022 2.022 sum 6.993 -10.174 -0.871 12.376 Atomic orbital electron populations 1.70768 1.06855 1.30684 1.46253 1.25874 0.96483 1.02663 0.93571 0.83490 0.74669 0.74926 0.76898 1.21301 1.21457 1.20907 1.21941 0.94390 0.90836 1.56259 0.93063 1.18339 0.92775 0.90620 0.97486 1.21071 1.00275 0.97994 0.91608 1.22400 0.91576 0.90203 0.98557 1.67202 1.15266 1.13753 1.27576 1.18225 0.91794 0.90297 0.88083 1.41947 1.50128 1.37099 1.11287 1.18005 1.04944 1.01101 0.81157 1.91396 1.87719 1.84779 1.48577 1.21379 0.94798 0.93226 1.00545 0.91984 0.95735 0.96021 0.82237 0.76860 0.76532 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.96 13.65 55.43 0.76 -26.20 14 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 14 3 Si 1.07 24.90 29.90 -169.99 -5.08 19.82 14 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 14 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 7 C -0.60 -16.43 9.09 -34.44 -0.31 -16.74 14 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 14 9 C 0.05 1.11 4.44 -29.03 -0.13 0.98 14 10 C -0.11 -2.24 5.09 -104.47 -0.53 -2.77 14 11 C 0.13 2.53 10.84 -17.57 -0.19 2.34 14 12 N -0.52 -9.71 10.39 -12.36 -0.13 -9.83 14 13 C 0.35 6.11 7.76 -154.84 -1.20 4.91 14 14 N -0.86 -11.03 9.08 31.19 0.28 -10.75 14 15 C -0.03 -0.47 7.35 -39.10 -0.29 -0.76 14 16 F -0.15 -2.43 16.65 2.25 0.04 -2.40 14 17 C -0.07 -1.43 9.83 -39.26 -0.39 -1.82 14 18 H 0.27 7.88 7.22 -40.82 -0.29 7.59 14 19 H 0.02 0.61 7.96 -51.92 -0.41 0.20 14 20 H 0.02 0.55 7.95 -51.93 -0.41 0.13 14 21 H 0.16 2.90 8.06 -52.48 -0.42 2.48 14 22 H 0.40 4.42 8.95 -40.82 -0.37 4.06 14 23 H 0.41 4.36 8.30 -40.82 -0.34 4.02 14 24 H 0.14 2.63 8.06 -52.48 -0.42 2.21 14 LS Contribution 225.10 15.07 3.39 3.39 Total: -1.00 -30.13 225.10 -5.75 -35.88 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -1.87 Total: 3.53 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.14 Total: -13.44 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.91 Total: -46.78 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.13 -5.75 -35.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058244.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.806 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds