Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33394 * 122.53797 * 2 1 4 4 S 1.75883 * 109.59179 * 180.24091 * 3 2 1 5 5 C 1.75889 * 90.97088 * 359.72657 * 4 3 2 6 6 C 1.33383 * 109.59191 * 0.02562 * 5 4 3 7 7 C 1.50702 * 122.53876 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47327 * 265.02759 * 7 6 5 9 9 C 1.50697 * 109.46995 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72153 * 9 8 7 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48498 * 109.47416 * 59.99812 * 13 11 9 15 15 H 1.48508 * 109.46609 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46903 * 299.99397 * 13 11 9 17 17 H 1.09000 * 109.47592 * 270.25694 * 1 2 3 18 18 H 1.08996 * 109.47144 * 30.25948 * 1 2 3 19 19 H 1.09004 * 109.47026 * 150.25904 * 1 2 3 20 20 H 1.07998 * 125.20023 * 359.96468 * 3 2 1 21 21 H 1.07995 * 125.20138 * 179.97438 * 5 4 3 22 22 H 1.08998 * 109.47519 * 145.02461 * 7 6 5 23 23 H 1.09006 * 109.47270 * 25.02691 * 7 6 5 24 24 H 1.08998 * 109.47065 * 59.99424 * 8 7 6 25 25 H 1.09001 * 109.46892 * 299.99688 * 8 7 6 26 26 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.1246 0.0000 4 16 3.9386 0.7305 -0.0070 5 6 3.5737 -0.9901 -0.0012 6 6 2.2516 -1.1669 0.0048 7 6 1.6166 -2.5336 0.0114 8 6 1.2824 -2.9476 -1.4231 9 6 0.6480 -4.3145 -1.4165 10 1 0.5023 -4.8377 -0.4830 11 6 0.2584 -4.8995 -2.6027 12 7 0.4354 -4.2621 -3.7394 13 14 -0.5210 -6.5971 -2.5952 14 1 -1.7648 -6.5672 -1.7844 15 1 -0.8466 -6.9983 -3.9875 16 1 0.4294 -7.5754 -2.0081 17 1 -0.3634 0.0046 1.0276 18 1 -0.3633 0.8876 -0.5178 19 1 -0.3633 -0.8923 -0.5098 20 1 1.8154 2.1240 -0.0005 21 1 4.3078 -1.7822 -0.0031 22 1 0.7023 -2.5066 0.6042 23 1 2.3098 -3.2542 0.4454 24 1 2.1967 -2.9746 -2.0158 25 1 0.5892 -2.2271 -1.8571 26 1 0.1609 -4.6735 -4.5739 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = 7.991989 kcal Electronic energy + Delta-G solvation = -10039.196674 eV Core-core repulsion = 8208.706430 eV Total energy + Delta-G solvation = -1830.490244 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 196.062 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.36254 -33.50244 -31.44359 -29.90440 -27.00793 -24.85339 -22.22319 -20.66917 -17.46644 -17.11485 -16.20596 -14.58878 -14.46198 -13.55913 -13.32009 -12.60143 -12.39167 -12.15910 -11.67975 -11.60431 -11.40941 -10.88211 -10.82483 -10.64078 -10.37915 -9.79421 -9.56147 -9.08564 -8.33611 -8.20065 -7.74405 -5.98719 -4.01928 1.45576 2.10819 2.40691 3.19711 3.33840 3.38359 3.40894 4.46803 5.29268 5.36626 5.45443 5.80922 5.88265 5.98553 6.04089 6.23319 6.42778 6.61714 6.69651 6.88534 7.08388 7.14902 7.70293 7.83963 8.01934 8.41751 9.05141 9.62005 11.12225 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.064367 B = 0.008089 C = 0.007784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.902031 B = 3460.590497 C = 3596.185087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.085 4.085 3 C -0.225 4.225 4 S 0.043 5.957 5 C -0.215 4.215 6 C -0.076 4.076 7 C -0.060 4.060 8 C 0.031 3.969 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 H 0.065 0.935 18 H 0.060 0.940 19 H 0.083 0.917 20 H 0.157 0.843 21 H 0.160 0.840 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.016 0.984 25 H 0.019 0.981 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 8.531 7.142 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.359 4.359 4 S 0.307 5.693 5 C -0.349 4.349 6 C -0.087 4.087 7 C -0.100 4.100 8 C -0.007 4.007 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 H 0.083 0.917 18 H 0.079 0.921 19 H 0.102 0.898 20 H 0.174 0.826 21 H 0.177 0.823 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.038 0.962 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.410 9.396 6.939 12.485 hybrid contribution -1.574 -1.693 -0.189 2.319 sum 2.836 7.704 6.749 10.627 Atomic orbital electron populations 1.20607 0.89897 1.03516 1.01873 1.18935 0.97589 0.91663 1.01587 1.25242 0.95412 1.01840 1.13449 1.83865 1.07233 1.02414 1.75751 1.25313 0.99305 0.97571 1.12746 1.19299 0.92514 0.97495 0.99429 1.20586 0.98662 0.88992 1.01748 1.19061 0.96813 0.95878 0.88904 1.21223 1.39955 1.02136 0.92802 0.92651 1.25018 0.95974 0.97717 0.95628 1.69966 1.47654 1.38009 0.97724 0.86664 0.79820 0.84602 0.76946 1.20208 1.21313 1.20253 0.91669 0.92135 0.89770 0.82553 0.82256 0.92010 0.92384 0.96584 0.96249 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.55 36.01 0.34 -1.21 15 2 C -0.08 -1.47 5.80 -106.25 -0.62 -2.09 15 3 C -0.22 -3.45 10.98 29.04 0.32 -3.13 15 4 S 0.04 0.65 23.34 -107.50 -2.51 -1.86 15 5 C -0.21 -3.74 10.96 29.04 0.32 -3.42 15 6 C -0.08 -1.44 5.06 -106.25 -0.54 -1.98 15 7 C -0.06 -1.26 4.73 -27.88 -0.13 -1.40 15 8 C 0.03 0.80 4.87 -27.88 -0.14 0.66 15 9 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 15 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 12 N -0.89 -27.01 13.29 55.43 0.74 -26.28 15 13 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 15 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 18 H 0.06 0.82 8.12 -51.93 -0.42 0.40 15 19 H 0.08 1.50 6.24 -51.93 -0.32 1.18 15 20 H 0.16 1.96 8.06 -52.49 -0.42 1.54 15 21 H 0.16 2.55 8.06 -52.49 -0.42 2.13 15 22 H 0.06 1.25 7.44 -51.93 -0.39 0.86 15 23 H 0.06 1.19 8.10 -51.93 -0.42 0.77 15 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 25 H 0.02 0.53 7.17 -51.93 -0.37 0.16 15 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 239.51 15.07 3.61 3.61 Total: -1.00 -29.91 239.51 -7.19 -37.10 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.16 Total: -3.10 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -0.85 Total: -26.05 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.91 -7.19 -37.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.091 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds