Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33394 * 122.53797 * 2 1 4 4 S 1.75883 * 109.59179 * 180.24091 * 3 2 1 5 5 C 1.75889 * 90.97088 * 359.72657 * 4 3 2 6 6 C 1.33383 * 109.59191 * 0.02562 * 5 4 3 7 7 C 1.50702 * 122.53876 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47327 * 265.02759 * 7 6 5 9 9 C 1.50697 * 109.46995 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72153 * 9 8 7 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48498 * 109.47416 * 59.99812 * 13 11 9 15 15 H 1.48508 * 109.46609 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46903 * 299.99397 * 13 11 9 17 17 H 1.09000 * 109.47592 * 270.25694 * 1 2 3 18 18 H 1.08996 * 109.47144 * 30.25948 * 1 2 3 19 19 H 1.09004 * 109.47026 * 150.25904 * 1 2 3 20 20 H 1.07998 * 125.20023 * 359.96468 * 3 2 1 21 21 H 1.07995 * 125.20138 * 179.97438 * 5 4 3 22 22 H 1.08998 * 109.47519 * 145.02461 * 7 6 5 23 23 H 1.09006 * 109.47270 * 25.02691 * 7 6 5 24 24 H 1.08998 * 109.47065 * 59.99424 * 8 7 6 25 25 H 1.09001 * 109.46892 * 299.99688 * 8 7 6 26 26 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.1246 0.0000 4 16 3.9386 0.7305 -0.0070 5 6 3.5737 -0.9901 -0.0012 6 6 2.2516 -1.1669 0.0048 7 6 1.6166 -2.5336 0.0114 8 6 1.2824 -2.9476 -1.4231 9 6 0.6480 -4.3145 -1.4165 10 1 0.5023 -4.8377 -0.4830 11 6 0.2584 -4.8995 -2.6027 12 7 0.4354 -4.2621 -3.7394 13 14 -0.5210 -6.5971 -2.5952 14 1 -1.7648 -6.5672 -1.7844 15 1 -0.8466 -6.9983 -3.9875 16 1 0.4294 -7.5754 -2.0081 17 1 -0.3634 0.0046 1.0276 18 1 -0.3633 0.8876 -0.5178 19 1 -0.3633 -0.8923 -0.5098 20 1 1.8154 2.1240 -0.0005 21 1 4.3078 -1.7822 -0.0031 22 1 0.7023 -2.5066 0.6042 23 1 2.3098 -3.2542 0.4454 24 1 2.1967 -2.9746 -2.0158 25 1 0.5892 -2.2271 -1.8571 26 1 0.1609 -4.6735 -4.5739 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = -8.701636 kcal Electronic energy + Delta-G solvation = -10039.920564 eV Core-core repulsion = 8208.706430 eV Total energy + Delta-G solvation = -1831.214134 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 196.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73152 -35.53957 -33.21295 -31.41710 -28.56046 -26.62470 -23.88186 -22.35862 -18.95243 -18.49575 -18.18225 -16.52568 -15.95976 -14.99325 -14.90645 -14.28100 -13.85312 -13.81816 -13.32914 -13.10427 -12.86392 -12.70363 -12.48295 -12.32749 -11.79768 -11.67883 -11.48293 -11.13827 -10.53731 -9.51389 -9.03321 -8.18240 -6.30458 0.15753 0.86132 1.11916 1.41159 1.44348 1.52176 1.82257 2.42591 3.14460 4.04864 4.15672 4.50087 4.54513 4.64167 4.74676 4.84698 4.89212 5.07114 5.16991 5.30135 5.50071 5.57690 5.68221 5.85973 5.87110 6.24279 6.86359 7.38901 8.93041 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.064367 B = 0.008089 C = 0.007784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.902031 B = 3460.590497 C = 3596.185087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.113 4.113 3 C -0.218 4.218 4 S 0.098 5.902 5 C -0.231 4.231 6 C -0.103 4.103 7 C -0.046 4.046 8 C 0.040 3.960 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.267 1.267 17 H 0.083 0.917 18 H 0.079 0.921 19 H 0.051 0.949 20 H 0.189 0.811 21 H 0.165 0.835 22 H 0.066 0.934 23 H 0.059 0.941 24 H -0.017 1.017 25 H -0.005 1.005 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 9.028 8.064 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.352 4.352 4 S 0.363 5.637 5 C -0.366 4.366 6 C -0.115 4.115 7 C -0.086 4.086 8 C 0.003 3.997 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.192 1.192 17 H 0.101 0.899 18 H 0.098 0.902 19 H 0.070 0.930 20 H 0.206 0.794 21 H 0.183 0.817 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.002 0.998 25 H 0.013 0.987 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.439 9.901 7.880 13.410 hybrid contribution -1.501 -1.757 -0.479 2.360 sum 2.938 8.144 7.401 11.390 Atomic orbital electron populations 1.20569 0.89200 1.02812 1.02863 1.19079 0.98442 0.91731 1.03301 1.25664 0.95685 1.02690 1.11198 1.83667 1.06478 0.99397 1.74203 1.25580 0.99108 1.00027 1.11913 1.19240 0.93438 0.96933 1.01871 1.20282 0.99171 0.90827 0.98307 1.18873 0.94426 0.94851 0.91558 1.21680 1.40046 1.03179 0.93304 0.91916 1.25983 0.96411 1.02177 0.95114 1.70111 1.48781 1.40062 0.98464 0.85498 0.79192 0.79152 0.77193 1.18952 1.20953 1.19191 0.89873 0.90186 0.93007 0.79393 0.81704 0.91572 0.92224 0.99815 0.98683 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 9.55 71.24 0.68 -2.23 15 2 C -0.11 -3.80 5.80 -20.92 -0.12 -3.92 15 3 C -0.22 -6.10 10.98 66.72 0.73 -5.36 15 4 S 0.10 2.69 23.34 -56.49 -1.32 1.37 15 5 C -0.23 -7.88 10.96 66.72 0.73 -7.15 15 6 C -0.10 -3.90 5.06 -20.92 -0.11 -4.01 15 7 C -0.05 -1.98 4.73 29.85 0.14 -1.84 15 8 C 0.04 2.18 4.87 29.85 0.15 2.32 15 9 C -0.54 -31.25 9.11 25.60 0.23 -31.02 15 10 H 0.06 3.42 7.74 -2.92 -0.02 3.40 15 11 C 0.00 0.05 5.46 84.66 0.46 0.51 15 12 N -0.93 -57.65 13.29 21.45 0.28 -57.36 15 13 Si 0.97 44.38 29.54 68.60 2.03 46.41 15 14 H -0.26 -11.60 7.11 99.48 0.71 -10.90 15 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 17 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 18 H 0.08 2.06 8.12 -2.39 -0.02 2.04 15 19 H 0.05 1.90 6.24 -2.38 -0.01 1.88 15 20 H 0.19 3.97 8.06 -2.91 -0.02 3.94 15 21 H 0.17 5.23 8.06 -2.91 -0.02 5.21 15 22 H 0.07 2.73 7.44 -2.39 -0.02 2.71 15 23 H 0.06 2.48 8.10 -2.38 -0.02 2.46 15 24 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 15 25 H -0.01 -0.30 7.17 -2.39 -0.02 -0.32 15 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 15 Total: -1.00 -64.44 239.51 5.05 -59.39 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.15 Total: 2.88 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 2.90 Total: -52.69 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.32 Total: 1.37 kcal Total: -64.44 5.05 -59.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.691 kcal (2) G-P(sol) polarization free energy of solvation -64.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds