Wall clock time and date at job start Sun Mar 29 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47216 * 270.00474 * 3 2 1 5 5 H 1.48498 * 109.46747 * 30.00049 * 3 2 1 6 6 H 1.48494 * 109.47151 * 150.00019 * 3 2 1 7 7 C 1.37882 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99373 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00218 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.46796 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46749 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.29982 * 118.56290 * 95.00063 * 12 11 10 14 14 C 1.50389 * 122.51161 * 180.43182 * 13 12 11 15 15 C 1.53125 * 109.59556 * 343.37807 * 14 13 12 16 16 O 1.43308 * 108.41399 * 47.82310 * 15 14 13 17 17 C 1.42898 * 113.02169 * 291.85667 * 16 15 14 18 18 H 0.97002 * 119.99510 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47170 * 59.99854 * 9 7 2 20 20 H 1.08998 * 109.47227 * 299.99743 * 9 7 2 21 21 H 1.08997 * 109.47345 * 60.00527 * 10 9 7 22 22 H 1.08997 * 109.47431 * 299.99500 * 10 9 7 23 23 H 1.09002 * 109.47030 * 60.00288 * 11 10 9 24 24 H 1.08998 * 109.47414 * 300.00148 * 11 10 9 25 25 H 1.08003 * 118.75079 * 0.41182 * 13 12 11 26 26 H 1.08997 * 109.45433 * 223.33711 * 14 13 12 27 27 H 1.09003 * 109.42661 * 103.40157 * 14 13 12 28 28 H 1.09002 * 109.68336 * 167.56430 * 15 14 13 29 29 H 1.08999 * 109.68109 * 288.08078 * 15 14 13 30 30 H 1.09004 * 109.32593 * 289.92600 * 17 16 15 31 31 H 1.08996 * 109.25753 * 170.27764 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 6 6.0540 -4.0573 -0.0015 13 6 6.3540 -4.6110 -1.1385 14 6 6.8536 -6.0257 -1.2418 15 6 7.3268 -6.5049 0.1334 16 8 6.3186 -6.1784 1.0981 17 6 6.1855 -4.7720 1.3133 18 1 -0.4849 0.8401 0.0004 19 1 3.8753 -0.6803 0.8888 20 1 3.8746 -0.6800 -0.8911 21 1 3.6580 -3.1505 -0.8907 22 1 3.6587 -3.1501 0.8892 23 1 5.9156 -2.1223 0.8873 24 1 5.9142 -2.1229 -0.8927 25 1 6.2400 -4.0332 -2.0439 26 1 7.6844 -6.0668 -1.9462 27 1 6.0477 -6.6700 -1.5931 28 1 7.4802 -7.5839 0.1135 29 1 8.2602 -6.0063 0.3947 30 1 7.0662 -4.4026 1.8388 31 1 5.2983 -4.5832 1.9176 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:08 Heat of formation + Delta-G solvation = -55.807733 kcal Electronic energy + Delta-G solvation = -12093.889102 eV Core-core repulsion = 9953.712518 eV Total energy + Delta-G solvation = -2140.176584 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41059 -35.57786 -33.39178 -32.22404 -30.71622 -27.24725 -25.37501 -23.98708 -22.02830 -20.04972 -18.01039 -16.72622 -16.22517 -16.14103 -14.73614 -14.42247 -14.15302 -13.43661 -13.25568 -12.84921 -12.67408 -12.33631 -11.99102 -11.69368 -11.29885 -10.97699 -10.68665 -10.66161 -9.90996 -9.71200 -9.67668 -9.48203 -9.17109 -8.54744 -8.51423 -6.01861 -3.99583 2.29145 3.31796 3.38997 3.42879 3.88424 4.47112 4.80556 4.86769 4.94511 5.16226 5.32052 5.35505 5.47462 5.51154 5.63711 5.78243 5.89065 5.96734 6.00832 6.23010 6.52875 6.65033 6.74175 6.93333 6.98839 7.19210 7.34715 7.47138 7.82548 8.57522 9.03816 9.60800 11.11797 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.071031 B = 0.006584 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.099451 B = 4252.015407 C = 4325.820543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.095 4.095 11 C -0.088 4.088 12 C -0.147 4.147 13 C -0.166 4.166 14 C -0.122 4.122 15 C 0.057 3.943 16 O -0.380 6.380 17 C 0.095 3.905 18 H 0.262 0.738 19 H 0.015 0.985 20 H 0.010 0.990 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.560 -9.044 -0.320 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.147 4.147 13 C -0.184 4.184 14 C -0.159 4.159 15 C -0.020 4.020 16 O -0.298 6.298 17 C 0.019 3.981 18 H 0.072 0.928 19 H 0.033 0.967 20 H 0.028 0.972 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.287 -9.062 -0.219 17.772 hybrid contribution 0.423 1.208 -0.296 1.314 sum 15.710 -7.854 -0.515 17.571 Atomic orbital electron populations 1.69924 1.06313 1.26820 1.51365 1.25050 0.94732 0.99180 0.94636 0.86763 0.80349 0.83616 0.78458 1.20348 1.21405 1.19033 1.21180 0.89625 0.94453 1.50537 0.91076 1.19601 0.97092 0.92405 0.96132 1.21437 0.90892 0.99654 1.01320 1.20830 0.98178 0.91431 1.02098 1.21803 0.99369 0.98036 0.95503 1.21992 1.02398 0.96267 0.97719 1.21058 1.01418 0.95324 0.98104 1.22625 0.90651 1.00619 0.88086 1.88124 1.57944 1.22942 1.60808 1.21422 1.02162 0.80104 0.94418 0.92785 0.96668 0.97167 0.92793 0.92723 0.91733 0.91694 0.87202 0.90491 0.90246 0.88894 0.93068 0.92173 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.36 4.04 -27.89 -0.11 -0.48 16 10 C -0.10 -1.94 5.14 -26.73 -0.14 -2.08 16 11 C -0.09 -1.43 5.27 -27.88 -0.15 -1.58 16 12 C -0.15 -2.16 5.18 -101.01 -0.52 -2.68 16 13 C -0.17 -2.26 9.53 -35.89 -0.34 -2.60 16 14 C -0.12 -1.35 6.36 -27.97 -0.18 -1.53 16 15 C 0.06 0.62 6.89 37.22 0.26 0.88 16 16 O -0.38 -5.38 10.85 -35.23 -0.38 -5.76 16 17 C 0.10 1.30 6.76 35.78 0.24 1.54 16 18 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 19 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 20 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 22 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 24 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 25 H 0.11 1.47 7.83 -52.48 -0.41 1.06 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 257.31 15.07 3.88 3.88 Total: -1.00 -31.61 257.31 -6.75 -38.35 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.97 Total: -3.94 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.37 Total: -22.25 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.68 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.38 Total: -5.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.61 -6.75 -38.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.456 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds