Wall clock time and date at job start Sun Mar 29 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47216 * 270.00474 * 3 2 1 5 5 H 1.48498 * 109.46747 * 30.00049 * 3 2 1 6 6 H 1.48494 * 109.47151 * 150.00019 * 3 2 1 7 7 C 1.37882 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99373 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00218 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.46796 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46749 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.29982 * 118.56290 * 95.00063 * 12 11 10 14 14 C 1.50389 * 122.51161 * 180.43182 * 13 12 11 15 15 C 1.53125 * 109.59556 * 343.37807 * 14 13 12 16 16 O 1.43308 * 108.41399 * 47.82310 * 15 14 13 17 17 C 1.42898 * 113.02169 * 291.85667 * 16 15 14 18 18 H 0.97002 * 119.99510 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47170 * 59.99854 * 9 7 2 20 20 H 1.08998 * 109.47227 * 299.99743 * 9 7 2 21 21 H 1.08997 * 109.47345 * 60.00527 * 10 9 7 22 22 H 1.08997 * 109.47431 * 299.99500 * 10 9 7 23 23 H 1.09002 * 109.47030 * 60.00288 * 11 10 9 24 24 H 1.08998 * 109.47414 * 300.00148 * 11 10 9 25 25 H 1.08003 * 118.75079 * 0.41182 * 13 12 11 26 26 H 1.08997 * 109.45433 * 223.33711 * 14 13 12 27 27 H 1.09003 * 109.42661 * 103.40157 * 14 13 12 28 28 H 1.09002 * 109.68336 * 167.56430 * 15 14 13 29 29 H 1.08999 * 109.68109 * 288.08078 * 15 14 13 30 30 H 1.09004 * 109.32593 * 289.92600 * 17 16 15 31 31 H 1.08996 * 109.25753 * 170.27764 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 6 6.0540 -4.0573 -0.0015 13 6 6.3540 -4.6110 -1.1385 14 6 6.8536 -6.0257 -1.2418 15 6 7.3268 -6.5049 0.1334 16 8 6.3186 -6.1784 1.0981 17 6 6.1855 -4.7720 1.3133 18 1 -0.4849 0.8401 0.0004 19 1 3.8753 -0.6803 0.8888 20 1 3.8746 -0.6800 -0.8911 21 1 3.6580 -3.1505 -0.8907 22 1 3.6587 -3.1501 0.8892 23 1 5.9156 -2.1223 0.8873 24 1 5.9142 -2.1229 -0.8927 25 1 6.2400 -4.0332 -2.0439 26 1 7.6844 -6.0668 -1.9462 27 1 6.0477 -6.6700 -1.5931 28 1 7.4802 -7.5839 0.1135 29 1 8.2602 -6.0063 0.3947 30 1 7.0662 -4.4026 1.8388 31 1 5.2983 -4.5832 1.9176 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:08 Heat of formation + Delta-G solvation = -75.705035 kcal Electronic energy + Delta-G solvation = -12094.751914 eV Core-core repulsion = 9953.712518 eV Total energy + Delta-G solvation = -2141.039396 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41327 -36.99798 -35.11942 -33.73731 -32.16980 -28.89154 -26.39636 -25.44560 -23.39281 -21.82088 -19.11923 -18.80790 -17.25491 -17.17866 -16.31839 -15.86377 -15.65341 -14.91605 -14.57017 -14.24336 -14.03865 -13.67884 -13.32038 -13.21207 -12.82967 -12.57512 -12.17876 -11.82906 -11.77763 -11.41429 -11.33310 -11.24565 -10.77430 -10.51758 -9.68500 -8.30471 -6.35277 1.20363 1.35387 1.37776 1.50219 2.35953 2.97181 3.04743 3.79908 3.81013 4.08172 4.28969 4.31117 4.35895 4.51707 4.53802 4.60598 4.73874 4.84163 4.92676 5.05014 5.07037 5.09274 5.11791 5.52116 5.57872 5.59521 5.68968 5.95775 6.20694 6.28176 6.73059 7.29506 8.86788 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.071031 B = 0.006584 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.099451 B = 4252.015407 C = 4325.820543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.026 0.974 9 C -0.012 4.012 10 C -0.088 4.088 11 C -0.077 4.077 12 C -0.166 4.166 13 C -0.162 4.162 14 C -0.122 4.122 15 C 0.051 3.949 16 O -0.402 6.402 17 C 0.095 3.905 18 H 0.267 0.733 19 H 0.023 0.977 20 H 0.019 0.981 21 H 0.039 0.961 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.223 -8.586 -0.557 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.044 0.956 9 C -0.050 4.050 10 C -0.126 4.126 11 C -0.114 4.114 12 C -0.166 4.166 13 C -0.180 4.180 14 C -0.159 4.159 15 C -0.025 4.025 16 O -0.321 6.321 17 C 0.019 3.981 18 H 0.075 0.925 19 H 0.042 0.958 20 H 0.038 0.962 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.968 -8.626 -0.458 19.937 hybrid contribution -0.472 0.952 -0.267 1.095 sum 17.496 -7.674 -0.725 19.119 Atomic orbital electron populations 1.70087 1.08461 1.28242 1.52698 1.26111 0.95680 1.03818 0.93971 0.85573 0.79530 0.77732 0.79292 1.19065 1.20876 1.16674 1.21557 0.92475 0.92982 1.50530 0.95578 1.19564 0.93608 0.95131 0.96656 1.21283 0.94217 0.96874 1.00200 1.20658 0.94634 0.93127 1.03025 1.21757 1.00966 0.97388 0.96523 1.22312 1.00828 0.97522 0.97328 1.21142 1.02275 0.93439 0.99078 1.22888 0.90352 1.02200 0.87108 1.88093 1.59227 1.22980 1.61827 1.21411 1.02607 0.80160 0.93941 0.92464 0.95832 0.96226 0.94244 0.93677 0.90594 0.90969 0.87168 0.87776 0.90440 0.86722 0.91710 0.90287 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.96 44.87 27.47 68.60 1.88 46.75 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.09 -3.57 5.14 30.59 0.16 -3.41 16 11 C -0.08 -2.38 5.27 29.85 0.16 -2.22 16 12 C -0.17 -4.61 5.18 -15.58 -0.08 -4.69 16 13 C -0.16 -4.09 9.53 26.60 0.25 -3.83 16 14 C -0.12 -2.39 6.36 29.79 0.19 -2.20 16 15 C 0.05 0.96 6.89 72.02 0.50 1.46 16 16 O -0.40 -10.75 10.85 -148.98 -1.62 -12.36 16 17 C 0.09 2.46 6.76 71.09 0.48 2.94 16 18 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 19 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 20 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 21 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 24 H 0.07 2.11 7.86 -2.39 -0.02 2.09 16 25 H 0.11 2.73 7.83 -2.91 -0.02 2.71 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -68.81 257.31 4.07 -64.73 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.02 Total: 5.89 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 2.48 Total: -43.88 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.30 Total: -61.13 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.62 Total: -12.36 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -68.81 4.07 -64.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.972 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds